RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 COMMD1Q8N668 190 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 CD300LFQ8TDQ1 290 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 RBMXL1Q96E39 390 aaKnown RBP6.66□□□□□ -1.34
NEDD8-207ENST00000533242 ATP5SQ99766 215 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 SLC35B3Q9H1N7 401 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 SMCO4Q9NRQ5 59 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 RBM7Q9Y580 266 aaKnown RBP6.66□□□□□ -1.34
NEDD8-207ENST00000533242 IGHV3-43A0A0B4J1X8 118 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 RBFOX3A6NFN3 312 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 J3QW42 95 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 SH2D1BO14796 132 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 IGHV3-43DP0DP04 118 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 GLIPR1P48060 266 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 BAXQ07812 192 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 ZNF726P1Q15940 193 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 ZNF841Q6ZN19 808 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 Q8IYB0 196 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 OR8G5Q8NG78 346 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 RNASE11Q8TAA1 199 aaKnown RBP6.66□□□□□ -1.34
NEDD8-207ENST00000533242 MRGPRDQ8TDS7 321 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 SFT2D1Q8WV19 159 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 TBX15Q96SF7 602 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 PCGF1Q9BSM1 259 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 OR2D2Q9H210 308 aa6.66□□□□□ -1.34
NEDD8-207ENST00000533242 PUS1Q9Y606 427 aaKnown RBP eCLIP6.66□□□□□ -1.34
NEDD8-207ENST00000533242 PLXNB1O43157 2135 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 IGHV1-69DA0A0B4J2H0 117 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 CENPVL3A0A0U1RRI6 287 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 C22orf46C9J442 243 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 SYNGR2O43760 224 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 TOX4O94842 621 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 IGHV1-69P01742 117 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 HBZP02008 142 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 LIPFP07098 398 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 MMP9P14780 707 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 IER3P46695 156 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 SULT1A1P50225 295 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 AKR1D1P51857 326 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 CEBPGP53567 150 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 TAS2R30P59541 319 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 EIF4EBP1Q13541 118 aaPredicted RBP6.65□□□□□ -1.34
NEDD8-207ENST00000533242 ICAM4Q14773 271 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 UTF1Q5T230 341 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 SAMD5Q5TGI4 173 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 LYPD2Q6UXB3 125 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 ACP7Q6ZNF0 438 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 Q6ZSV7 163 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 MOB1BQ7L9L4 216 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 MOGAT3Q86VF5 341 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 FGFRL1Q8N441 504 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 FAM24BQ8N5W8 94 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 OR13A1Q8NGR1 328 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 RFESDQ8TAC1 157 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 LSM10Q969L4 123 aaKnown RBP6.65□□□□□ -1.34
NEDD8-207ENST00000533242 RPRMQ9NS64 109 aa6.65□□□□□ -1.34
NEDD8-207ENST00000533242 PCP4L1A6NKN8 68 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF727A8MUV8 499 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 C17orf98A8MV24 154 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 G3V4G9 280 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 KRASP01116 189 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 IGHV4-59P01825 116 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 SRP19P09132 144 aaKnown RBP6.65□□□□□ -1.35
NEDD8-207ENST00000533242 SLC25A6P12236 298 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 G6PCP35575 357 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 RPS16P62249 146 aaKnown RBP6.65□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF816Q0VGE8 651 aaPredicted RBP6.65□□□□□ -1.35
NEDD8-207ENST00000533242 CYB561D1Q8N8Q1 229 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 Q8TCH9 128 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 PSENENQ9NZ42 101 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 WSB1Q9Y6I7 421 aa6.65□□□□□ -1.35
NEDD8-207ENST00000533242 A0A1B0GW64 132 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 A0A1B0GWJ7 208 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 LINC00473A8K010 186 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 PROP1O75360 226 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 S1PR2O95136 353 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 P0C879 139 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 IRF2P14316 349 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 PAX6P26367 422 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 GATA4P43694 442 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 GABRA2P47869 451 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 FGF8P55075 233 aaPredicted RBP6.64□□□□□ -1.35
NEDD8-207ENST00000533242 COL10A1Q03692 680 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 SPINK9Q5DT21 86 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 KRBOX4Q5JUW0 171 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 SPANXN5Q5MJ07 72 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 FAM201AQ5SY85 155 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 STX12Q86Y82 276 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 CD177Q8N6Q3 437 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 C15orf54Q8N8G6 183 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 YPEL4Q96NS1 127 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 RAB40CQ96S21 281 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 SIRPDQ9H106 197 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 KIAA1456Q9P272 454 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 TMEM30CPA0ZSE6 113 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 TMEM210A6NLX4 147 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 SCAF4O95104 1147 aaKnown RBP6.64□□□□□ -1.35
NEDD8-207ENST00000533242 IGKV1D-33P01593 117 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 IGKV1-33P01594 117 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 IGHV3-7P01780 117 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 FOLR2P14207 255 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms