RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 C12orf45Q8N5I9 185 aaPredicted RBP11.35□□□□□ -0.59
CPSF1-206ENST00000531480 COMMD1Q8N668 190 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 OR5AU1Q8NGC0 362 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 GALNT14Q96FL9 552 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 SEC22AQ96IW7 307 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 TP53RKQ96S44 253 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 TET2Q6N021 2002 aaPredicted RBP11.35□□□□□ -0.59
CPSF1-206ENST00000531480 TRRAPQ9Y4A5 3859 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 CCNKO75909 580 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 SFT2D2O95562 160 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 IGLV1-40P01703 118 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 P0C879 139 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 CYCSP99999 105 aaKnown RBP11.34□□□□□ -0.59
CPSF1-206ENST00000531480 FXYD3Q14802 87 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 MYOZ3Q8TDC0 251 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 GLYATL2Q8WU03 294 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 ARPC1AQ92747 370 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 R3HDM4Q96D70 268 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 CLCC1Q96S66 551 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 NAA60Q9H7X0 242 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 LINC00527Q9UJ94 153 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 FLVCR2Q9UPI3 526 aa11.34□□□□□ -0.59
CPSF1-206ENST00000531480 PKD1L1Q8TDX9 2849 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 TRAV41A0A0B4J266 112 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 C9orf170A2RU37 121 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 ADARB2-AS1A8MUL3 147 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 G3V318 75 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 UPK2O00526 184 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 FBXO24O75426 580 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 BRI3O95415 125 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 CDS2O95674 445 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 SERPINE2P07093 398 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 CD28P10747 220 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 PSMB8P28062 276 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 SUPT4H1P63272 117 aaKnown RBP11.33□□□□□ -0.6
CPSF1-206ENST00000531480 SLC35B1P78383 322 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 DHRS2Q13268 280 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 FOXE3Q13461 319 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 TEX38Q6PEX7 206 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 ZNF329Q86UD4 541 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 LGI3Q8N145 548 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 ADAD2Q8NCV1 583 aaKnown RBP11.33□□□□□ -0.6
CPSF1-206ENST00000531480 MITD1Q8WV92 249 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 TMEM68Q96MH6 324 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 TMEM222Q9H0R3 208 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 PARP11Q9NR21 331 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 ZFP57Q9NU63 452 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 TMEM140Q9NV12 185 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 CACFD1Q9UGQ2 172 aa11.33□□□□□ -0.6
CPSF1-206ENST00000531480 DUXBA0A1W2PPF3 345 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 SOX15O60248 233 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 ELANEP08246 267 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 VDAC1P21796 283 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 RPL8P62917 257 aaKnown RBP11.32□□□□□ -0.6
CPSF1-206ENST00000531480 TMEM267Q0VDI3 215 aaPredicted RBP11.32□□□□□ -0.6
CPSF1-206ENST00000531480 ASPHD1Q5U4P2 390 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 SSX9Q7RTT3 188 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 UXS1Q8NBZ7 420 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 OR4X2Q8NGF9 303 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 SRSF12Q8WXF0 261 aaKnown RBP11.32□□□□□ -0.6
CPSF1-206ENST00000531480 TMEM56Q96MV1 263 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 TMEM56-RWDD3S4R434 201 aa11.32□□□□□ -0.6
CPSF1-206ENST00000531480 TRAV3A0A0B4J244 114 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 A0A1B0GW64 132 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 KRASP01116 189 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 OR5AC1P0C628 307 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 G6PCP35575 357 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 ERVK-16P61578 105 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 FGL1Q08830 312 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 PPP1R1AQ13522 171 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 TNXAQ16473 311 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 NDUFA11Q86Y39 141 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 ZNF695Q8IW36 515 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 LFNGQ8NES3 379 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 DMBX1Q8NFW5 382 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 IL22RA2Q969J5 263 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 CITED2Q99967 270 aaPredicted RBP11.31□□□□□ -0.6
CPSF1-206ENST00000531480 FAM103A1Q9BTL3 118 aaKnown RBP11.31□□□□□ -0.6
CPSF1-206ENST00000531480 WSB1Q9Y6I7 421 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 NBEAL1Q6ZS30 2694 aa11.31□□□□□ -0.6
CPSF1-206ENST00000531480 A0A1B0GVG6 124 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 CGB1A6NKQ9 187 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 TEX22C9J3V5 150 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 E7EUB6 86 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 CNIH1O95406 144 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 IGKV1-5P01602 117 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 OR9G9P0C7N8 305 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 HLA-GP17693 338 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 KIAA0141Q14154 515 aaPredicted RBP11.3□□□□□ -0.6
CPSF1-206ENST00000531480 TMEM187Q14656 261 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 KLK9Q2XQG4 91 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 SP6Q3SY56 376 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 GSG1LQ6UXU4 331 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 OR5M8Q8NGP6 311 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 GRPEL2Q8TAA5 225 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 LHFPL5Q8TAF8 219 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 CASTOR1Q8WTX7 329 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 SPIN2AQ99865 258 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 SPIN2BQ9BPZ2 258 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 SEC22CQ9BRL7 303 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms