RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TMEM140Q9NV12 185 aa15.81■□□□□ 0.12
VPS28-206ENST00000526734 EXTL2Q9UBQ6 330 aa15.81■□□□□ 0.12
VPS28-206ENST00000526734 KLK9Q9UKQ9 250 aa15.81■□□□□ 0.12
VPS28-206ENST00000526734 PSMB6P28072 239 aa15.8■□□□□ 0.12
VPS28-206ENST00000526734 HSD17B13Q7Z5P4 300 aaPredicted RBP15.8■□□□□ 0.12
VPS28-206ENST00000526734 OR9G4Q8NGQ1 327 aa15.8■□□□□ 0.12
VPS28-206ENST00000526734 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.79■□□□□ 0.12
VPS28-206ENST00000526734 MARCH11A6NNE9 402 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 RBMXL2O75526 392 aaKnown RBP15.79■□□□□ 0.12
VPS28-206ENST00000526734 PRH1P02810 166 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 NHLRC4P0CG21 123 aaPredicted RBP15.79■□□□□ 0.12
VPS28-206ENST00000526734 CTRB1P17538 263 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 OR2B8PP59922 312 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 MRPS10P82664 201 aaKnown RBP15.79■□□□□ 0.12
VPS28-206ENST00000526734 DEFA5Q01523 94 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 C15orf32Q32M92 178 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 CTRB2Q6GPI1 263 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 SLC38A6Q8IZM9 456 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 SIGLEC8Q9NYZ4 499 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 PEMTQ9UBM1 199 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 SMAD5-AS1Q9Y6J3 95 aa15.79■□□□□ 0.12
VPS28-206ENST00000526734 CYB5BO43169 146 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 OR2J3O76001 311 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 IGLV1-51P01701 117 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 IFNA6P05013 189 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 SPNP16150 400 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 TMBIM6P55061 237 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 SYNJ2BPP57105 145 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 RNASE10Q5GAN6 216 aaKnown RBP15.78■□□□□ 0.12
VPS28-206ENST00000526734 ARRDC1Q8N5I2 433 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 RSRP1Q9BUV0 290 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 RABL2AQ9UBK7 228 aaPredicted RBP15.78■□□□□ 0.12
VPS28-206ENST00000526734 MTFP1Q9UDX5 166 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 FBXL7Q9UJT9 491 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 RABL2BQ9UNT1 228 aa15.78■□□□□ 0.12
VPS28-206ENST00000526734 A0A1B0GW64 132 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 E7EUB6 86 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 NOL3O60936 208 aaKnown RBP15.77■□□□□ 0.12
VPS28-206ENST00000526734 TRBV12-3P01733 135 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 DEFA4P12838 97 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 GP9P14770 177 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 AREGP15514 252 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 LPAR6P43657 344 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 CLVS1Q8IUQ0 354 aaPredicted RBP15.77■□□□□ 0.12
VPS28-206ENST00000526734 ZNF486Q96H40 463 aaPredicted RBP15.77■□□□□ 0.12
VPS28-206ENST00000526734 TSC22D3Q99576 134 aa15.77■□□□□ 0.12
VPS28-206ENST00000526734 QTRT1Q9BXR0 403 aaKnown RBP15.77■□□□□ 0.12
VPS28-206ENST00000526734 CCDC59Q9P031 241 aaKnown RBP15.77■□□□□ 0.12
VPS28-206ENST00000526734 H0Y980 276 aa15.76■□□□□ 0.11
VPS28-206ENST00000526734 BMPR1BO00238 502 aa15.76■□□□□ 0.11
VPS28-206ENST00000526734 RGS5O15539 181 aa15.76■□□□□ 0.11
VPS28-206ENST00000526734 RPL5P46777 297 aaKnown RBP15.76■□□□□ 0.11
VPS28-206ENST00000526734 SSBP1Q04837 148 aaKnown RBP15.76■□□□□ 0.11
VPS28-206ENST00000526734 FCAMRQ8WWV6 532 aa15.76■□□□□ 0.11
VPS28-206ENST00000526734 CXorf58Q96LI9 332 aa15.76■□□□□ 0.11
VPS28-206ENST00000526734 FANCD2OSQ96PS1 177 aa15.76■□□□□ 0.11
VPS28-206ENST00000526734 THYN1Q9P016 225 aa15.76■□□□□ 0.11
VPS28-206ENST00000526734 IGLC7A0M8Q6 106 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 CGB1A6NKQ9 187 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 SNAPC5O75971 98 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 PTBP1P26599 531 aaKnown RBP eCLIP15.75■□□□□ 0.11
VPS28-206ENST00000526734 SPCS2Q15005 226 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 ZNF585BQ52M93 769 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 PHLDA2Q53GA4 152 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 OR1L8Q8NGR8 309 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 OR52I2Q8NH67 350 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 EEF1AKMT3Q96AZ1 226 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 FKBP11Q9NYL4 201 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 KLK11Q9UBX7 282 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 PRNDQ9UKY0 176 aa15.75■□□□□ 0.11
VPS28-206ENST00000526734 IGLV11-55A0A075B6I3 123 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 TRAV3A0A0B4J244 114 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 GABARAPH6UMI1 98 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 M0QYG6 137 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 GGCTO75223 188 aaKnown RBP15.74■□□□□ 0.11
VPS28-206ENST00000526734 KRASP01116 189 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 TRAPPC2P0DI81 140 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 TRAPPC2BP0DI82 140 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 TAS2R19P59542 299 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 RND3P61587 244 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 IL34Q6ZMJ4 242 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 TBC1D26Q86UD7 250 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 OR2K2Q8NGT1 345 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 OR5B3Q8NH48 314 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 ABHD1Q96SE0 405 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 MIXL1Q9H2W2 232 aa15.74■□□□□ 0.11
VPS28-206ENST00000526734 TRBV7-1A0A0A6YYK4 115 aa15.73■□□□□ 0.11
VPS28-206ENST00000526734 CD3DP04234 171 aa15.73■□□□□ 0.11
VPS28-206ENST00000526734 MYOD1P15172 320 aa15.73■□□□□ 0.11
VPS28-206ENST00000526734 RNASE12Q5GAN4 147 aaKnown RBP15.73■□□□□ 0.11
VPS28-206ENST00000526734 LCN12Q6JVE5 192 aa15.73■□□□□ 0.11
VPS28-206ENST00000526734 LHFPL1Q86WI0 220 aa15.73■□□□□ 0.11
VPS28-206ENST00000526734 TMEM229BQ8NBD8 167 aa15.73■□□□□ 0.11
VPS28-206ENST00000526734 LSM10Q969L4 123 aaKnown RBP15.73■□□□□ 0.11
VPS28-206ENST00000526734 SORL1Q92673 2214 aa15.73■□□□□ 0.11
VPS28-206ENST00000526734 NDUFB8O95169 186 aa15.72■□□□□ 0.11
VPS28-206ENST00000526734 CD74P04233 296 aa15.72■□□□□ 0.11
VPS28-206ENST00000526734 CSN3P07498 182 aa15.72■□□□□ 0.11
VPS28-206ENST00000526734 PGAM2P15259 253 aa15.72■□□□□ 0.11
VPS28-206ENST00000526734 RPA2P15927 270 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms