RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 WDR61Q9GZS3 305 aaKnown RBP1.74□□□□□ -2.13
CD44-216ENST00000525293 CHST6Q9GZX3 395 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 IFI27L2Q9H2X8 130 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 POMKQ9H5K3 350 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 TMEM9BQ9NQ34 198 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 KCNIP2Q9NS61 270 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 FKBP11Q9NYL4 201 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 EHFQ9NZC4 300 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 KCNIP1Q9NZI2 227 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 WRAP73Q9P2S5 460 aaPredicted RBP1.74□□□□□ -2.13
CD44-216ENST00000525293 CLCF1Q9UBD9 225 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 RPUSD1Q9UJJ7 312 aaKnown RBP1.74□□□□□ -2.13
CD44-216ENST00000525293 ZNF257Q9Y2Q1 563 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 SOX21Q9Y651 276 aaPredicted RBP1.74□□□□□ -2.13
CD44-216ENST00000525293 LINC00312Q9Y6C7 94 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 KIF25-AS1Q9Y6Z4 181 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 DISP1Q96F81 1524 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 RALGAPA1Q6GYQ0 2036 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 SHANK2Q9UPX8 1470 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 KIAA1551Q9HCM1 1747 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 MYH11P35749 1972 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 TECPR2O15040 1411 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 AKAP11Q9UKA4 1901 aa1.74□□□□□ -2.13
CD44-216ENST00000525293 COL1A2P08123 1366 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 COL16A1Q07092 1604 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 DENND4AQ7Z401 1863 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 FOCADQ5VW36 1801 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 MYO5BQ9ULV0 1848 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 hCG_1818297A0A087WSY0 165 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 IGKV1D-8A0A087WSZ0 117 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 A0A087X0T9 212 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TRGV10A0A0A0MS01 117 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 A0A0A6YYD4 124 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TRAV5A0A0B4J249 113 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TRAV8-6A0A0B4J262 113 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 IGHV1-69-2A0A0G2JMI3 117 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 A0A1B0GWB2 263 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 IGLC7A0M8Q6 106 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 PLAC8L1A1L4L8 177 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 GGT3PA6NGU5 568 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 OR2T8A6NH00 312 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 RIIAD1A6NNX1 92 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 LYRM9A8MSI8 78 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 A8MT66 165 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 ZNF705FA8MVS1 300 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 GGTLC3B5MD39 225 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 GABARAPH6UMI1 98 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 J3QR89 54 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 K7EPK0 472 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 RTL8CO15255 209 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BKO60814 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 REM1O75628 298 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 OR2A4O95047 310 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 LGALS2P05162 132 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HLA-DQB2P05538 268 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 EIF4EP06730 217 aaKnown RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BJP06899 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 ZNF705DP0CH99 300 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 ZNF705BP0CI00 300 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 INAFM2P0DMQ5 153 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BOP23527 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BBP33778 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 CCR2P41597 374 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 LPAR6P43657 344 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 PPICP45877 212 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HINT1P49773 126 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 INSL3P51460 131 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 P2RX1P51575 399 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 GPM6AP51674 278 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 NDUFA8P51970 172 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 CRISP3P54108 245 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 FOXA3P55318 350 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 GFERP55789 205 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BDP58876 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TPPP2P59282 170 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TIMM10P62072 90 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 PPP1CAP62136 330 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BCP62807 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HERVK_113P63121 156 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 EIF5AP63241 154 aaKnown RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 HBG1P69891 147 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HBG2P69892 147 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 CRADDP78560 199 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 MYL5Q02045 173 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 ATP5G2Q06055 141 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 PNOCQ13519 176 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 C1DQ13901 141 aaKnown RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 ELOCQ15369 112 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TGIF1Q15583 401 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST2H2BEQ16778 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 Q1RN00 199 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 GSG1Q2KHT4 349 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 Q499Y3 187 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TCEAL5Q5H9L2 206 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 PVRIGQ6DKI7 326 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 Q6ZVQ6 151 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 SLC22A24Q8N4F4 322 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 KCNRGQ8N5I3 272 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 C3orf22Q8N5N4 141 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms