RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 COL5A2P05997 1499 aaPredicted RBP3.59□□□□□ -1.84
USP47-204ENST00000525078 AHDC1Q5TGY3 1603 aaPredicted RBP3.59□□□□□ -1.84
USP47-204ENST00000525078 CUL7Q14999 1698 aa3.59□□□□□ -1.84
USP47-204ENST00000525078 CHD5Q8TDI0 1954 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 TDRD6O60522 2096 aaKnown RBP3.58□□□□□ -1.84
USP47-204ENST00000525078 A8MWP4 228 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 BET1O15155 118 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 CSN2P05814 226 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 RPS4Y1P22090 263 aaKnown RBP3.58□□□□□ -1.84
USP47-204ENST00000525078 PIGPP57054 158 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 KRTAP10-9P60411 292 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 CDC42P60953 191 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 RPL30P62888 115 aaKnown RBP3.58□□□□□ -1.84
USP47-204ENST00000525078 Q6ZR03 302 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 Q6ZTC4 211 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 C12orf45Q8N5I9 185 aaPredicted RBP3.58□□□□□ -1.84
USP47-204ENST00000525078 ZNF709Q8N972 641 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 OR9Q1Q8NGQ5 310 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 RNASE11Q8TAA1 199 aaKnown RBP3.58□□□□□ -1.84
USP47-204ENST00000525078 PLEKHB2Q96CS7 222 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 RNF5Q99942 180 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 HSPB9Q9BQS6 159 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 LINC00574Q9H8X3 128 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 EFCAB1Q9HAE3 211 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 PDFQ9HBH1 243 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 RASL12Q9NYN1 266 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 JPT1Q9UK76 154 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 SNX12Q9UMY4 172 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 ICOSQ9Y6W8 199 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 ARHGEF11O15085 1522 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 BICRAQ9NZM4 1560 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 E9PCH4 1651 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 SCN10AQ9Y5Y9 1956 aa3.58□□□□□ -1.84
USP47-204ENST00000525078 TMEM269A0A1B0GVZ9 245 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 A0A1B0GW54 56 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 SLC25A20O43772 301 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 CST8O60676 142 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 DENND4BO75064 1496 aaPredicted RBP3.57□□□□□ -1.84
USP47-204ENST00000525078 ZNF324O75467 553 aaPredicted RBP3.57□□□□□ -1.84
USP47-204ENST00000525078 CEP152O94986 1710 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 LINC00869P0C866 280 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 NPY1RP25929 384 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 MPV17P39210 176 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 AKR1C3P42330 323 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 KRTAP10-11P60412 298 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 FKBP1AP62942 108 aaKnown RBP3.57□□□□□ -1.84
USP47-204ENST00000525078 DHRS2Q13268 280 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 TCOF1Q13428 1488 aaKnown RBP3.57□□□□□ -1.84
USP47-204ENST00000525078 KIF14Q15058 1648 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 OR8G1Q15617 311 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 LTC4SQ16873 150 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 SMIM21Q3B7S5 101 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 MRPL51Q4U2R6 128 aaKnown RBP3.57□□□□□ -1.84
USP47-204ENST00000525078 ZFAND6Q6FIF0 208 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 ANKRD12Q6UB98 2062 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 SUPT6HQ7KZ85 1726 aaKnown RBP3.57□□□□□ -1.84
USP47-204ENST00000525078 CLVS1Q8IUQ0 354 aaPredicted RBP3.57□□□□□ -1.84
USP47-204ENST00000525078 PLEKHH2Q8IVE3 1493 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 EHBP1L1Q8N3D4 1523 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 RPS4Y2Q8TD47 263 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 CASKIN1Q8WXD9 1431 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 CAPZA3Q96KX2 299 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 CCDC115Q96NT0 180 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 SPANXCQ9NY87 97 aa3.57□□□□□ -1.84
USP47-204ENST00000525078 MYH2Q9UKX2 1941 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 FMN1Q68DA7 1419 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 FGD6Q6ZV73 1430 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 SSH2Q76I76 1423 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 DEGS1O15121 323 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 SH2D1AO60880 128 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 GADD45GO95257 159 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST1H2BOP23527 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 CRYBB3P26998 211 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST1H2BBP33778 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 CSN1S1P47710 185 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 VEGFCP49767 419 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST1H2BDP58876 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 CKS1BP61024 79 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 AP1S1P61966 158 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST1H2BCP62807 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST2H2BEQ16778 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 DEFB115Q30KQ5 88 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.56□□□□□ -1.84
USP47-204ENST00000525078 Q6ZR54 194 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 SSX8Q7RTT4 187 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 ADM2Q7Z4H4 148 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 CD200R1Q8TD46 325 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST1H2BHQ93079 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 RNASE6Q93091 150 aaKnown RBP3.56□□□□□ -1.84
USP47-204ENST00000525078 IP6K3Q96PC2 410 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 MGLLQ99685 303 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST1H2BNQ99877 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 HIST1H2BMQ99879 126 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 IMUPQ9GZP8 106 aa3.56□□□□□ -1.84
USP47-204ENST00000525078 PAIP2BQ9ULR5 123 aaKnown RBP3.56□□□□□ -1.84
USP47-204ENST00000525078 AMMECR1Q9Y4X0 333 aaPredicted RBP3.56□□□□□ -1.84
USP47-204ENST00000525078 SAMD9Q5K651 1589 aa3.55□□□□□ -1.84
USP47-204ENST00000525078 SVILO95425 2214 aa3.55□□□□□ -1.84
USP47-204ENST00000525078 GAPVD1Q14C86 1478 aa3.55□□□□□ -1.84
USP47-204ENST00000525078 SPATA31E1Q6ZUB1 1445 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms