RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 ZNF45Q02386 682 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 RPEL1Q2QD12 228 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 C10orf55Q5SWW7 151 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 SNX29P2Q8IUI4 249 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 DMBX1Q8NFW5 382 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 OR51H1Q8NH63 302 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 FYTTD1Q96QD9 318 aaKnown RBP13.21□□□□□ -0.29
CCNC-213ENST00000523541 COMMD5Q9GZQ3 224 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 NAA50Q9GZZ1 169 aaKnown RBP13.21□□□□□ -0.29
CCNC-213ENST00000523541 RABL2AQ9UBK7 228 aaPredicted RBP13.21□□□□□ -0.29
CCNC-213ENST00000523541 RABL2BQ9UNT1 228 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 SORL1Q92673 2214 aa13.21□□□□□ -0.29
CCNC-213ENST00000523541 HMX3A6NHT5 357 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 E7EUB6 86 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 CYB5BO43169 146 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 SPNP16150 400 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 CTRB1P17538 263 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 C15orf32Q32M92 178 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 CTRB2Q6GPI1 263 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 SLC38A6Q8IZM9 456 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 PEMTQ9UBM1 199 aa13.2□□□□□ -0.3
CCNC-213ENST00000523541 MARCH11A6NNE9 402 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 H0Y980 276 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 RBMXL2O75526 392 aaKnown RBP13.19□□□□□ -0.3
CCNC-213ENST00000523541 RLN1P04808 185 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 GP9P14770 177 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 TMBIM6P55061 237 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 OR2B8PP59922 312 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 MRPS10P82664 201 aaKnown RBP13.19□□□□□ -0.3
CCNC-213ENST00000523541 SSBP1Q04837 148 aaKnown RBP13.19□□□□□ -0.3
CCNC-213ENST00000523541 EXOSC2Q13868 293 aaKnown RBP13.19□□□□□ -0.3
CCNC-213ENST00000523541 RAB2BQ8WUD1 216 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 WWC2-AS2Q96NR7 200 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 TMEM140Q9NV12 185 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 FKBP11Q9NYL4 201 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 THYN1Q9P016 225 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 U3KQK5 164 aa13.19□□□□□ -0.3
CCNC-213ENST00000523541 OR2J3O76001 311 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 S1PR2O95136 353 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 PRH1P02810 166 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 IFNA6P05013 189 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 DEFA4P12838 97 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 PTBP1P26599 531 aaKnown RBP eCLIP13.18□□□□□ -0.3
CCNC-213ENST00000523541 LPAR6P43657 344 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 SYNJ2BPP57105 145 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 IL34Q6ZMJ4 242 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 HAPLN4Q86UW8 402 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 ARRDC1Q8N5I2 433 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 FCAMRQ8WWV6 532 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 ZNF486Q96H40 463 aaPredicted RBP13.18□□□□□ -0.3
CCNC-213ENST00000523541 CXorf58Q96LI9 332 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 FANCD2OSQ96PS1 177 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 TSC22D3Q99576 134 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 QTRT1Q9BXR0 403 aaKnown RBP13.18□□□□□ -0.3
CCNC-213ENST00000523541 FXYD6Q9H0Q3 95 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 EXTL2Q9UBQ6 330 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 MTFP1Q9UDX5 166 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 FBXL7Q9UJT9 491 aa13.18□□□□□ -0.3
CCNC-213ENST00000523541 TRBV7-1A0A0A6YYK4 115 aa13.17□□□□□ -0.3
CCNC-213ENST00000523541 A0A1B0GW64 132 aa13.17□□□□□ -0.3
CCNC-213ENST00000523541 GGCTO75223 188 aaKnown RBP13.17□□□□□ -0.3
CCNC-213ENST00000523541 SNAPC5O75971 98 aa13.17□□□□□ -0.3
CCNC-213ENST00000523541 ZNF585BQ52M93 769 aa13.17□□□□□ -0.3
CCNC-213ENST00000523541 OR1L8Q8NGR8 309 aa13.17□□□□□ -0.3
CCNC-213ENST00000523541 OR2K2Q8NGT1 345 aa13.17□□□□□ -0.3
CCNC-213ENST00000523541 KLK11Q9UBX7 282 aa13.17□□□□□ -0.3
CCNC-213ENST00000523541 CGB1A6NKQ9 187 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 BMPR1BO00238 502 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 TRBV12-3P01733 135 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 TRAPPC2P0DI81 140 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 TRAPPC2BP0DI82 140 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 AREGP15514 252 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 RPA2P15927 270 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 RPL5P46777 297 aaKnown RBP13.16□□□□□ -0.3
CCNC-213ENST00000523541 RNASE10Q5GAN6 216 aaKnown RBP13.16□□□□□ -0.3
CCNC-213ENST00000523541 GPHB5Q86YW7 130 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 EEF1AKMT3Q96AZ1 226 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 ABHD1Q96SE0 405 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 PRNDQ9UKY0 176 aa13.16□□□□□ -0.3
CCNC-213ENST00000523541 IGLV11-55A0A075B6I3 123 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 TRAV3A0A0B4J244 114 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 TEX50A0A1B0GTY4 177 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 IGLC7A0M8Q6 106 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 GABARAPH6UMI1 98 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 LGALS9O00182 355 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 KRASP01116 189 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 CSN3P07498 182 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 RND3P61587 244 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 CLVS1Q8IUQ0 354 aaPredicted RBP13.15□□□□□ -0.3
CCNC-213ENST00000523541 Q8N402 240 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 TMEM229BQ8NBD8 167 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 OR1L6Q8NGR2 347 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 OR5B3Q8NH48 314 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 OR52I2Q8NH67 350 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 ATP6V0BQ99437 205 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 NDUFA4L2Q9NRX3 87 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 DMRT1Q9Y5R6 373 aa13.15□□□□□ -0.3
CCNC-213ENST00000523541 A8MZ25 164 aa13.14□□□□□ -0.31
CCNC-213ENST00000523541 RGS5O15539 181 aa13.14□□□□□ -0.31
CCNC-213ENST00000523541 NDUFB8O95169 186 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms