RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PPICP45877 212 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 ASCL1P50553 236 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 P2RX1P51575 399 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 TCL1AP56279 114 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 TAS2R31P59538 309 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 HLA-DRB3P79483 266 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 MEF2BQ02080 365 aaPredicted RBP4.52□□□□□ -1.69
NUP54-218ENST00000515460 KIAA0040Q15053 153 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 KRTAP27-1Q3LI81 207 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 AGTRAPQ6RW13 159 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 CENPVQ7Z7K6 275 aaPredicted RBP4.52□□□□□ -1.69
NUP54-218ENST00000515460 LINC00471Q8N535 108 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 ZNF709Q8N972 641 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 ZNF485Q8NCK3 441 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 APCDD1LQ8NCL9 501 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 ZNF439Q8NDP4 499 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 ZNF740Q8NDX6 193 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 OR51T1Q8NGJ9 327 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 BLNKQ8WV28 456 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 IL22RA2Q969J5 263 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 FGGYQ96C11 551 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 GPR21Q99679 349 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 DOHHQ9BU89 302 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 EFCAB11Q9BUY7 163 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 RSPO3Q9BXY4 272 aaPredicted RBP4.52□□□□□ -1.69
NUP54-218ENST00000515460 AICDAQ9GZX7 198 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 POLR2J3Q9H1A7 115 aaKnown RBP4.52□□□□□ -1.69
NUP54-218ENST00000515460 NXF5Q9H1B4 397 aaKnown RBP4.52□□□□□ -1.69
NUP54-218ENST00000515460 DEFB127Q9H1M4 99 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 OR51I1Q9H343 314 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 EGLN3Q9H6Z9 239 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 DEPPQ9NTK1 212 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 FAM206AQ9NX38 181 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 MDFICQ9P1T7 246 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 NAT8BQ9UHF3 227 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 CYSLTR1Q9Y271 337 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 ETV7Q9Y603 341 aa4.52□□□□□ -1.69
NUP54-218ENST00000515460 IGKV3D-11A0A0A0MRZ8 115 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 C13orf42A0A1B0GVH6 325 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 PINLYPA6NC86 204 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 FAM90A18PA6NE21 464 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 FAM90A16PA6NEW6 464 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 FAM90A9PA6NNJ1 464 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 FAM90A5PA8MXJ8 464 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 C4orf51C9J302 202 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 PRKNO60260 465 aaPredicted RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 RAMP1O60894 148 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 ARL6IP5O75915 188 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 VENTXO95231 258 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 CGAP01215 116 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 HLA-HP01893 362 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 HLA-DQA2P01906 255 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 SERPINE2P07093 398 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 DBIP07108 87 aaKnown RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 FAM90A15PP0C7V4 464 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 FAM90A14PP0C7W9 464 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 DANCRP0C864 163 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 HIST1H1TP22492 207 aaPredicted RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 NPY1RP25929 384 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 HINT1P49773 126 aaPredicted RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 ATP1B3P54709 279 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 UBE2MP61081 183 aaKnown RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 ERVK11-1P61568 191 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 LCN2P80188 198 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 PSG9Q00887 426 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 FOXF1Q12946 379 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 ADIRFQ15847 76 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 TNXAQ16473 311 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 DEFB134Q4QY38 66 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 TMEM78Q5T7P6 136 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 AMMECR1LQ6DCA0 310 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 TMEM211Q6ICI0 200 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 ZNF343Q6P1L6 599 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 H1FNTQ75WM6 255 aaPredicted RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 ZNF429Q86V71 674 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 SYS1Q8N2H4 156 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 TTC9CQ8N5M4 171 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 ZFP62Q8NB50 900 aaPredicted RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 OR2T33Q8NG76 320 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 OR13C6PQ8NH95 151 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 CMTM2Q8TAZ6 248 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 NT5CQ8TCD5 201 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 PTPMT1Q8WUK0 201 aaPredicted RBP4.51□□□□□ -1.69
NUP54-218ENST00000515460 RND1Q92730 232 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 STARD4Q96DR4 205 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 URB1-AS1Q96HZ7 61 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 AP1S3Q96PC3 154 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 RCHY1Q96PM5 261 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 ANAPC13Q9BS18 74 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 ST6GALNAC5Q9BVH7 336 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 DEFB126Q9BYW3 111 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 DPY30Q9C005 99 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 POPDC3Q9HBV1 291 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 KIAA1456Q9P272 454 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 GPR132Q9UNW8 380 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 SIGLEC9Q9Y336 463 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 NOTCH3Q9UM47 2321 aa4.51□□□□□ -1.69
NUP54-218ENST00000515460 INTS1Q8N201 2190 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 A0A087WX48 190 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 TRBV5-7A0A0A0MS05 114 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms