RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	PPP5D1	E7EU14	171 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	BMPR1B	O00238	502 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	CTDSP2	O14595	271 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	RGS5	O15539	181 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	NDUFB8	O95169	186 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	HLA-A	P01891	365 aa	Known RBP	10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	F2R	P25116	425 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	PSMB6	P28072	239 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	G6PC	P35575	357 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	OR2B8P	P59922	312 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	POU2AF1	Q16633	256 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	RPEL1	Q2QD12	228 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	C15orf32	Q32M92	178 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	ZNF585B	Q52M93	769 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	IL34	Q6ZMJ4	242 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	SLC25A42	Q86VD7	318 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	NECAP1	Q8NC96	275 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	OR10W1	Q8NGF6	305 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	OR4A5	Q8NH83	315 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	DGCR14	Q96DF8	476 aa	Known RBP	10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	FANCD2OS	Q96PS1	177 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	ABHD1	Q96SE0	405 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	ASCL2	Q99929	193 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	COMMD9	Q9P000	198 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	NSG2	Q9Y328	171 aa		10.15	□□□□□ -0.78
RNF4-215	ENST00000511843	IGLC7	A0M8Q6	106 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	MARCH11	A6NNE9	402 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	NPIPB5	A8MRT5	1133 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	KRAS	P01116	189 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	CD3D	P04234	171 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	GP9	P14770	177 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	PI3	P19957	117 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	EDN2	P20800	178 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	ERVK-16	P61578	105 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	TBC1D26	Q86UD7	250 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	CMTM1	Q8IZ96	169 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	OR4D10	Q8NGI6	311 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	OR9G4	Q8NGQ1	327 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	OR6Q1	Q8NGQ2	317 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	BORCS5	Q969J3	196 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	ELOVL1	Q9BW60	279 aa		10.14	□□□□□ -0.79
RNF4-215	ENST00000511843	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	IGLV1-51	P01701	117 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	CRYGC	P07315	174 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	CTRB1	P17538	263 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	RNASE10	Q5GAN6	216 aa	Known RBP	10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	VAX1	Q5SQQ9	334 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	CTRB2	Q6GPI1	263 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	DYNC2LI1	Q8TCX1	351 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	CD300LF	Q8TDQ1	290 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	CCDC140	Q96MF4	163 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	AIFM2	Q9BRQ8	373 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	COMMD5	Q9GZQ3	224 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	MTFP1	Q9UDX5	166 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	DMRT1	Q9Y5R6	373 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	SELENOK	Q9Y6D0	94 aa		10.13	□□□□□ -0.79
RNF4-215	ENST00000511843	TEX50	A0A1B0GTY4	177 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	MFSD2B	A6NFX1	497 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	DBX1	A6NMT0	343 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	CSN3	P07498	182 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	DEFA4	P12838	97 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	PGAM2	P15259	253 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	PPP5C	P53041	499 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	DCTN2	Q13561	401 aa	Known RBP	10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	FAAP20	Q6NZ36	180 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	CLEC19A	Q6UXS0	136 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	RAB2B	Q8WUD1	216 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	HINT2	Q9BX68	163 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	QTRT1	Q9BXR0	403 aa	Known RBP	10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	ZC4H2	Q9NQZ6	224 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	SMAD5-AS1	Q9Y6J3	95 aa		10.12	□□□□□ -0.79
RNF4-215	ENST00000511843	IGLV11-55	A0A075B6I3	123 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	IZUMO1R	A6ND01	250 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	OR2C1	O95371	312 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	IGKV1-39	P01597	117 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	IGKV1D-39	P04432	117 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	IFNA6	P05013	189 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	TMBIM6	P55061	237 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	WT1-AS	Q06250	92 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	LPCAT3	Q6P1A2	487 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	SLC38A6	Q8IZM9	456 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843	OR51B2	Q9Y5P1	312 aa		10.11	□□□□□ -0.79
RNF4-215	ENST00000511843		H3BMQ9	156 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	DHFR	P00374	187 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	TRAPPC2	P0DI81	140 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	TRAPPC2B	P0DI82	140 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	OR13C7	P0DN81	318 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	ARL3	P36405	182 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	RPL5	P46777	297 aa	Known RBP	10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	UCP3	P55916	312 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	IZUMO4	Q1ZYL8	232 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	SCGB2B2	Q4G0G5	96 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	ADAMTSL5	Q6ZMM2	481 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	LHFPL1	Q86WI0	220 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	OR1L8	Q8NGR8	309 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	MRGPRF	Q96AM1	343 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	ISOC1	Q96CN7	298 aa		10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	C6orf62	Q9GZU0	229 aa	Predicted RBP	10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	CCDC59	Q9P031	241 aa	Known RBP	10.1	□□□□□ -0.79
RNF4-215	ENST00000511843	IGHV3-21	A0A0B4J1V1	117 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms