RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TM4SF19Q96DZ7 209 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 RCC1LQ96I51 464 aaKnown RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 PRADC1Q9BSG0 188 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 SLC25A39Q9BZJ4 359 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 KIR2DL5BA0A0G2JN68 375 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 KIR2DL5BA0A0G2JPC4 375 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 MYBPHLA2RUH7 354 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 LINC01553A4QN01 128 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 UPK3AO75631 287 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 CXCL14O95715 111 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 GZMBP10144 247 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 LGALS7P47929 136 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 UCNP55089 124 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 RPL18Q07020 188 aaKnown RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 CSRP2Q16527 193 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 SRSF7Q16629 238 aaKnown RBP eCLIP3.06□□□□□ -1.92
USP53-205ENST00000509769 C5orf64Q2M2E5 130 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 WDR38Q5JTN6 314 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 SPATA46Q5T0L3 261 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 FAAP20Q6NZ36 180 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 UNQ9370/PRO34162Q6UXP9 181 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 KIR2DL5AQ8N109 375 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 ZNF664Q8N3J9 261 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 SLC37A2Q8TED4 501 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 WBP1Q96G27 269 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 CXXC4Q9H2H0 198 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 OTORQ9NRC9 128 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 SS18L2Q9UHA2 77 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 FOXD3Q9UJU5 478 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 TRBV20OR9-2A0A075B6H5 130 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 IGKV6D-41A0A0C4DH26 115 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 A0A0U1RQV5 110 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 MYMXA0A1B0GTQ4 84 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 A0A1W2PQD3 144 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 FFAR1O14842 300 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 NPFFO15130 113 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 CDK2AP2O75956 126 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ZNF121P58317 390 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 LYZP61626 148 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 LGALS9BQ3B8N2 356 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ANXA2RQ3ZCQ2 193 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 CENPWQ5EE01 88 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 C10orf91Q5T1B1 145 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 LGALS9CQ6DKI2 356 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 TEX43Q6ZNM6 134 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ZNF818PQ6ZRF7 136 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 RPS27LQ71UM5 84 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 IGFBPL1Q8WX77 278 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 DUX3Q96PT4 197 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 VGLL1Q99990 258 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 SNHG12Q9BXW3 62 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 SEMA5BQ9P283 1151 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 FBLN5Q9UBX5 448 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 PLAGL1Q9UM63 463 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ALPK3Q96L96 1907 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 SYS1-DBNDD2H3BUS1 97 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 COX8AP10176 69 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 HOXD3P31249 432 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 UBE2AP49459 152 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 SRSF2Q01130 221 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 EIF4EBP2Q13542 120 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 RUNX3Q13761 415 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ANKRD34AQ69YU3 496 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 COLCA1Q6ZS62 124 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ZNF524Q96C55 264 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 SLC25A38Q96DW6 304 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 FBXO17Q96EF6 278 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 TMEM141Q96I45 108 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 NRTNQ99748 197 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ZMAT3Q9HA38 289 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 PHLDA3Q9Y5J5 127 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 TMEM56-RWDD3S4R434 201 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 SAA2-SAA4A0A096LPE2 208 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 A0A1B0GX78 115 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 A0A1W2PPV9 198 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 LEPROTO15243 131 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 IGHV2-5P01817 119 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 IL6RP08887 468 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 SNRPCP09234 159 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 IGLC2P0DOY2 106 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 IGLC3P0DOY3 106 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ADMP35318 185 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 RGRP47804 291 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 PCBP3P57721 371 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 FAM189BP81408 668 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 KRTAP21-3Q3LHN1 58 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 KHDC1LQ5JSQ8 128 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 COA6Q5JTJ3 125 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 EBLN2Q6P2I7 272 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 Q6ZVL8 140 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 HAPLN4Q86UW8 402 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 WNT10AQ9GZT5 417 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 C20orf141Q9NUB4 165 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 SLC25A37Q9NYZ2 338 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 H3BP45 60 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 J3QT63 122 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 UCP1P25874 307 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 CX3CL1P78423 397 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 FUT5Q11128 374 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms