RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 WFDC3Q8IUB2 231 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 FANCD2OSQ96PS1 177 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 OVOL2Q9BRP0 275 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 C5orf66Q9H5L9 145 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 MLXQ9UH92 298 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 RYR2Q92736 4967 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 OR4C46A6NHA9 309 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 AREGP15514 252 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 NQO2P16083 231 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 ATF4P18848 351 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 GPR183P32249 361 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 TAS2R31P59538 309 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 ERVK-16P61578 105 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 TNFRSF9Q07011 255 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 KLK9Q2XQG4 91 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 SPAG16Q8N0X2 631 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 SECTM1Q8WVN6 248 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 KLK9Q9UKQ9 250 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 DMRT1Q9Y5R6 373 aa15.75■□□□□ 0.11
SQSTM1-210ENST00000506042 IGLV11-55A0A075B6I3 123 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 IGKV1D-8A0A087WSZ0 117 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 KIR2DL5BA0A0G2JN68 375 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 KIR2DL5BA0A0G2JPC4 375 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 HPRT1P00492 218 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 CMC4P56277 68 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 TIMM50Q3ZCQ8 353 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 C22orf42Q6IC83 251 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 SPSB3Q6PJ21 355 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 KIR2DL5AQ8N109 375 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 DMBX1Q8NFW5 382 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 KIR2DL5BQ8NHK3 375 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 VN1R17PQ8TDU5 208 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 NUDCD2Q8WVJ2 157 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 ATP6V0BQ99437 205 aa15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 DAZ1Q9NQZ3 744 aaKnown RBP15.74■□□□□ 0.11
SQSTM1-210ENST00000506042 TMEM235A6NFC5 223 aa15.73■□□□□ 0.11
SQSTM1-210ENST00000506042 MRPS14O60783 128 aaKnown RBP15.73■□□□□ 0.11
SQSTM1-210ENST00000506042 PTBP1P26599 531 aaKnown RBP eCLIP15.73■□□□□ 0.11
SQSTM1-210ENST00000506042 SCAND1P57086 179 aa15.73■□□□□ 0.11
SQSTM1-210ENST00000506042 BEST4Q8NFU0 473 aa15.73■□□□□ 0.11
SQSTM1-210ENST00000506042 OR13F1Q8NGS4 319 aa15.73■□□□□ 0.11
SQSTM1-210ENST00000506042 S4R3C0 116 aa15.73■□□□□ 0.11
SQSTM1-210ENST00000506042 IGKV1D-13A0A0B4J2D9 117 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 REG1AP05451 166 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 C8orf88P0DMB2 117 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 IGKV1-13P0DP09 117 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 CEMP1Q6PRD7 247 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 LYG2Q86SG7 212 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 FCGR1BQ92637 280 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 BSCL2Q96G97 398 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 QTRT1Q9BXR0 403 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 DAPK2Q9UIK4 370 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 SSR3Q9UNL2 185 aa15.72■□□□□ 0.11
SQSTM1-210ENST00000506042 A0A0A6YYH2 397 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 A0A0J9YWU9 116 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 A6NJ64 397 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 TSPAN4O14817 238 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 TGOLN2O43493 480 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 FCGR2CP31995 323 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 CBX5P45973 191 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 ZNF502Q8TBZ5 544 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 SLC5A7Q9GZV3 580 aa15.71■□□□□ 0.11
SQSTM1-210ENST00000506042 CSMD3Q7Z407 3707 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 IGLV2-14P01704 120 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 FGF9P31371 208 aaPredicted RBP15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 OR2B8PP59922 312 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 HERV-K104P61576 105 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 TSPAN14Q8NG11 270 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 GALNT14Q96FL9 552 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 CNBD2Q96M20 576 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 LYSTQ99698 3801 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 PLEKHA2Q9HB19 425 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 DIABLOQ9NR28 239 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 RHBDL2Q9NX52 303 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 COMMD9Q9P000 198 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 ETV7Q9Y603 341 aa15.7■□□□□ 0.1
SQSTM1-210ENST00000506042 MFSD2BA6NFX1 497 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 TNFSF12O43508 249 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 PPYP01298 95 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 TRAPPC2P0DI81 140 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 TRAPPC2BP0DI82 140 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 EDN2P20800 178 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 GABARAPL2P60520 117 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 DEFB135Q30KP9 77 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 GDPD1Q8N9F7 314 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 TMEM190Q8WZ59 177 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 CMTM3Q96MX0 182 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 ZNF436Q9C0F3 470 aaPredicted RBP15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 MFFQ9GZY8 342 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 CCL28Q9NRJ3 127 aa15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 ELF5Q9UKW6 265 aaPredicted RBP15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 RRP15Q9Y3B9 282 aaKnown RBP15.69■□□□□ 0.1
SQSTM1-210ENST00000506042 E7EUB6 86 aa15.68■□□□□ 0.1
SQSTM1-210ENST00000506042 SULT1C2O00338 296 aa15.68■□□□□ 0.1
SQSTM1-210ENST00000506042 NDUFA4O00483 81 aa15.68■□□□□ 0.1
SQSTM1-210ENST00000506042 UPK2O00526 184 aa15.68■□□□□ 0.1
SQSTM1-210ENST00000506042 SNAPC5O75971 98 aa15.68■□□□□ 0.1
SQSTM1-210ENST00000506042 S100GP29377 79 aa15.68■□□□□ 0.1
SQSTM1-210ENST00000506042 EIF4EBP1Q13541 118 aaPredicted RBP15.68■□□□□ 0.1
SQSTM1-210ENST00000506042 POU2AF1Q16633 256 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms