RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 WSB1Q9Y6I7 421 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM56-RWDD3S4R434 201 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 TRAV3A0A0B4J244 114 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 TRAV41A0A0B4J266 112 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 A0A0B4J2A0 478 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 A0A1W2PN81 502 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 MSGN1A6NI15 193 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 PTTG1O95997 202 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 IFNA21P01568 189 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 IFNA17P01571 189 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 HOXB5P09067 269 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 APELAP0DMC3 54 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 CHRNA7P36544 502 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 MECP2P51608 486 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 OR2B8PP59922 312 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 POU2AF1Q16633 256 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 RGS21Q2M5E4 152 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 ANKRD55Q3KP44 614 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 THOC7Q6I9Y2 204 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM65Q6PI78 240 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 LYZL2Q7Z4W2 148 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 ZNF329Q86UD4 541 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 FAM219AQ8IW50 185 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 SLC35G3Q8N808 338 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 LFNGQ8NES3 379 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 OR5AU1Q8NGC0 362 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 OR4X2Q8NGF9 303 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 OR52B4Q8NGK2 314 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 SGMS2Q8NHU3 365 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 LHFPL5Q8TAF8 219 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 SRSF12Q8WXF0 261 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 IL22RA2Q969J5 263 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 SEC22CQ9BRL7 303 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 GPN1Q9HCN4 374 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 ENY2Q9NPA8 101 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 SERTAD4Q9NUC0 356 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 SHPKQ9UHJ6 478 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 MMP24Q9Y5R2 645 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 MTORP42345 2549 aa6.48□□□□□ -1.37
LIMCH1-206ENST00000505705 DUXBA0A1W2PPF3 345 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 G3V318 75 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 DUS4LO95620 317 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 IGKV1-5P01602 117 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 IGF1P05019 195 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 MYOD1P15172 320 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 COMPP49747 757 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 NDPQ00604 133 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 DHRS2Q13268 280 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 IZUMO4Q1ZYL8 232 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 KHDC1LQ5JSQ8 128 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 C10orf55Q5SWW7 151 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 TEX38Q6PEX7 206 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 C11orf44Q8N8P7 122 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 OR5T1Q8NG75 326 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 OR1L8Q8NGR8 309 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 OR1S1Q8NH92 325 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 ZNF431Q8TF32 576 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 LSM10Q969L4 123 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 GPR146Q96CH1 333 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM68Q96MH6 324 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 MDFIQ99750 246 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 SPIN2AQ99865 258 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 SPIN2BQ9BPZ2 258 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 QTRT1Q9BXR0 403 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 MXRA5Q9NR99 2828 aa6.47□□□□□ -1.37
LIMCH1-206ENST00000505705 TEX50A0A1B0GTY4 177 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 C13orf42A0A1B0GVH6 325 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 HMX3A6NHT5 357 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 C15orf61A6NNL5 157 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 FAM25EA8MYX2 175 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 PRAF2O60831 178 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 FBXO24O75426 580 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 NXPH3O95157 252 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 IL5P05113 134 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 IL6RP08887 468 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 FGF2P09038 288 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 TRAPPC2P0DI81 140 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 TRAPPC2BP0DI82 140 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 SULT1A3P0DMM9 295 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 SULT1A4P0DMN0 295 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 EGR2P11161 476 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 DEFA4P12838 97 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 SPNP16150 400 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 PROK1P58294 105 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 MRGPRG-AS1Q2M3A8 158 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 AKIRIN2Q53H80 203 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 CXorf66Q5JRM2 361 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 MRPL41Q8IXM3 137 aaKnown RBP6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 CADM3Q8N126 398 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 C12orf45Q8N5I9 185 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 LRTM2Q8N967 370 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 OR5B3Q8NH48 314 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 MARVELD1Q9BSK0 173 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 WNT10AQ9GZT5 417 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 COA4Q9NYJ1 87 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 CACNG5Q9UF02 275 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 FOXA2Q9Y261 457 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 FBXO7Q9Y3I1 522 aa6.46□□□□□ -1.38
LIMCH1-206ENST00000505705 TMED3Q9Y3Q3 217 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms