RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GAL3ST2Q9H3Q3 398 aa13.31□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TRAV38-1A0A0B4J264 116 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 SRRM5B3KS81 715 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 C11orf94C9JXX5 98 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TNFSF13O75888 250 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 HRASP01112 189 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 VDAC2P45880 294 aaPredicted RBP13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 ZNF134P52741 427 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CLEC12BQ2HXU8 276 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CR1LQ2VPA4 569 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TMEM249Q2WGJ8 235 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TMEM183AQ8IXX5 376 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 OR2Z1Q8NG97 314 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 ANAPC16Q96DE5 110 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 OR5B12Q96R08 314 aa13.3□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 FAM90A9PA6NNJ1 464 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PRSS46E5RG02 174 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 VENTXO95231 258 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CGAP01215 116 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 LOXL3P58215 753 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RPL39P5Q59GN2 51 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 SPRNQ5BIV9 151 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 LRP11Q86VZ4 500 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 JPT1Q9UK76 154 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RRHO14718 337 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 YPEL1O60688 119 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GNB1P62873 340 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PRAMEF5Q5TYX0 476 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 C1orf229Q6ZS94 237 aaPredicted RBP13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 VKORC1L1Q8N0U8 176 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TMEM170AQ8WVE7 144 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RAB1CQ92928 201 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 STARD4Q96DR4 205 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 YPEL2Q96QA6 119 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GNG12Q9UBI6 72 aa13.29□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TRAV3A0A0B4J244 114 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 M0R1X1 148 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CEACAM4O75871 244 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CRYAAP02489 173 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RPLP1P05386 114 aaKnown RBP13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GZMBP10144 247 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 ATP5G3P48201 142 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 EDDM3BP56851 147 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RELBQ01201 579 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PDLIM3Q53GG5 364 aaPredicted RBP13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 COA6Q5JTJ3 125 aaKnown RBP13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 UTF1Q5T230 341 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TREML4Q6UXN2 200 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GCSAMQ8N6F7 178 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RBMXL3Q8N7X1 1067 aaKnown RBP13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 SARAFQ96BY9 339 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 IFI27L2Q9H2X8 130 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 DUSP13Q9UII6 198 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 IGHV3OR15-7A0A075B7D8 119 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PPP5D1E7EU14 171 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 IGHV3-13P01766 116 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 IGHV3-7P01780 117 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 OR1P1Q8NH06 330 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 OR52E5Q8NH55 327 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 C22orf15Q8WYQ4 148 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 FAM234AQ9H0X4 552 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 SLC25A15Q9Y619 301 aa13.28□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPQ1 181 aa13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 A8MXE2 369 aa13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 F2RL2O00254 374 aa13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 MGST3O14880 152 aa13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RBFOX2O43251 390 aaKnown RBP eCLIP13.27□□□□□ -0.282e-6■■■□□ 15.3
MSH5-SAPCD1-208ENST00000498473 BMP5P22003 454 aa13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 P2RY6Q15077 328 aa13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PRR30Q53SZ7 412 aaPredicted RBP13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 BHLHA15Q7RTS1 189 aaPredicted RBP13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 OR4A16Q8NH70 328 aa13.27□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TRAV17A0A0B4J275 112 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 AMBPP02760 352 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TYMSP04818 313 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CFHR2P36980 270 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 SRP14P37108 136 aaKnown RBP13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 OPRK1P41145 380 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 UBE2G2P60604 165 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 RBX1P62877 108 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MZT1Q08AG7 82 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 SEM1Q6ZVN7 128 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 LINC01551Q86U37 167 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ZNRF1Q8ND25 227 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 OR2T10Q8NGZ9 312 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 DDB2Q92466 427 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 C1orf159Q96HA4 380 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MGST2Q99735 147 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MS4A5Q9H3V2 200 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PATZ1Q9HBE1 687 aaKnown RBP13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 RALYQ9UKM9 306 aaKnown RBP13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PROCRQ9UNN8 238 aa13.27□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PRSS47A8MTI9 375 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TMPRSS2O15393 492 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 SOX15O60248 233 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MPDU1O75352 247 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 GCGP01275 180 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CGB3P0DN86 165 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CGB7P0DN87 165 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 FAM3BP58499 235 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms