RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MBD3L2Q8NHZ7 208 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 Q8TCH9 128 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 CUL9Q8IWT3 2517 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 A8MWP6 167 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 R3HDM4Q96D70 268 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 LURAP1Q96LR2 239 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 TRBV20OR9-2A0A075B6H5 130 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 A6NNC1 897 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 KLK10O43240 276 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 CLDN14O95500 239 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 SNRNP40Q96DI7 357 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 CTDSP1Q9GZU7 261 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 FOXH1O75593 365 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 OR5I1Q13606 314 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 PRAMEF5Q5TYX0 476 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 ZCCHC24Q8N2G6 241 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 ZBTB34Q8NCN2 500 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 FAM103A1Q9BTL3 118 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 NBASA2RRP1 2371 aa13.65□□□□□ -0.22
CCDC88B-210ENST00000494566 PIGBOS1A0A0B4J2F0 54 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 PMS2P5A8MQ11 134 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 CEACAM4O75871 244 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 DUTP33316 252 aaKnown RBP13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 KLF3P57682 345 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 MORN2Q502X0 79 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 TMEM242Q9NWH2 141 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 GATA2P23769 480 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 HLA-DRB5Q30154 266 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 KIAA1644Q3SXP7 199 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 ZNF705AQ6ZN79 300 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 LINC01551Q86U37 167 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 MRPL37Q9BZE1 423 aaKnown RBP13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 OR6C3Q9NZP0 311 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 ZNRD1Q9P1U0 126 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 NAV3Q8IVL0 2385 aa13.64□□□□□ -0.23
CCDC88B-210ENST00000494566 FAM90A26D6RGX4 464 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 CNN1P51911 297 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 TCL1AP56279 114 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 MOB3BQ86TA1 216 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 RAI1Q7Z5J4 1906 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 C15orf62A8K5M9 175 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 PRB4P10163 310 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 RBMXL3Q8N7X1 1067 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 RAB29O14966 203 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 TCAPO15273 167 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 CD1BP29016 333 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 ADMP35318 185 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 PDLIM3Q53GG5 364 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 MANBALQ9NQG1 85 aa13.63□□□□□ -0.23
CCDC88B-210ENST00000494566 TLN1Q9Y490 2541 aaKnown RBP13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 TMEM170AQ8WVE7 144 aa13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 TMEM18Q96B42 140 aa13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 HSD17B10Q99714 261 aaKnown RBP13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 MS4A5Q9H3V2 200 aa13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 LOXL3P58215 753 aa13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 TAS2R60P59551 318 aa13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 PAM16Q9Y3D7 125 aa13.62□□□□□ -0.23
CCDC88B-210ENST00000494566 DSCAML1Q8TD84 2053 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 IGHV3-48P01763 117 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 GNG10P50151 68 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 TCF15Q12870 199 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 ACTL10Q5JWF8 245 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 TIMM23BQ5SRD1 257 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 OCC1Q8TAD7 63 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 FKBP11Q9NYL4 201 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 ZZEF1O43149 2961 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 F6UZH7 168 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 MGST3O14880 152 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 ADH4P08319 380 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 HTD2P86397 168 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 FXYD3Q14802 87 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 C1orf185Q5T7R7 199 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 TOMM20LQ6UXN7 152 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 MS4A10Q96PG2 267 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 TBX15Q96SF7 602 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 SNHG12Q9BXW3 62 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 IFI27L2Q9H2X8 130 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 SEPSECSQ9HD40 501 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 CALYQ9NYX4 217 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 DCHS2Q6V1P9 2916 aa13.61□□□□□ -0.23
CCDC88B-210ENST00000494566 LHFPL4Q7Z7J7 247 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 FAM216BQ8N7L0 139 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 NHLRC2Q8NBF2 726 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 OR4A16Q8NH70 328 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 CCL13Q99616 98 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 DYSFO75923 2080 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 ACOT6Q3I5F7 207 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 KCNIP4Q6PIL6 250 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 Q6ZS92 163 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 FAM90A1Q86YD7 464 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 YTHDF2Q9Y5A9 579 aaKnown RBP13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 SPTA1P02549 2419 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 MDFIC2A0A1B0GVS7 189 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 TMEM250H0YL14 139 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 MMP23AO75900 390 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 GLRXP35754 106 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 CDKN1AP38936 164 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 RAB4BP61018 213 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 MLANAQ16655 118 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 OR5R1Q8NH85 324 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms