RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	OR52B4	Q8NGK2	314 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	SRSF12	Q8WXF0	261 aa	Known RBP	11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	FKBP11	Q9NYL4	201 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	SHPK	Q9UHJ6	478 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	PRND	Q9UKY0	176 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	WSB1	Q9Y6I7	421 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	TRAV41	A0A0B4J266	112 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	DUXB	A0A1W2PPF3	345 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	DHFR	P00374	187 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	OPN1MW	P04001	364 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	OPN1MW2	P0DN77	364 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	OPN1MW3	P0DN78	364 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	SPN	P16150	400 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	RPL27A	P46776	148 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	SLC35B1	P78383	322 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	SSBP2	P81877	361 aa	Predicted RBP	11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	IZUMO4	Q1ZYL8	232 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	C10orf55	Q5SWW7	151 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	LYZL2	Q7Z4W2	148 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	LRTM2	Q8N967	370 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	SGMS2	Q8NHU3	365 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	LSM10	Q969L4	123 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	FYTTD1	Q96QD9	318 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	SEC22C	Q9BRL7	303 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	MARVELD1	Q9BSK0	173 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	GPN1	Q9HCN4	374 aa	Predicted RBP	11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	FBXO7	Q9Y3I1	522 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	FBN1	P35555	2871 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	TNC	P24821	2201 aa		11.47	□□□□□ -0.57
BRCA1-223	ENST00000494123	PSMB11	A5LHX3	300 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	MSGN1	A6NI15	193 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	C15orf61	A6NNL5	157 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	PRAF2	O60831	178 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	FGF2	P09038	288 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	MYOD1	P15172	320 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	PROK1	P58294	105 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	UNQ5815/PRO19632	Q6UWF5	114 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	C12orf54	Q6X4T0	127 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	LFNG	Q8NES3	379 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	ZNF431	Q8TF32	576 aa	Predicted RBP	11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	SPIN2A	Q99865	258 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	SPIN2B	Q9BPZ2	258 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	WNT10A	Q9GZT5	417 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	ZNF580	Q9UK33	172 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123	OR51B2	Q9Y5P1	312 aa		11.46	□□□□□ -0.57
BRCA1-223	ENST00000494123		A0A0G2JRQ6	117 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123		G3V318	75 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	IL5	P05113	134 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	HOXB5	P09067	269 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123		P0C879	139 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	MITD1	Q8WV92	249 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	GPR146	Q96CH1	333 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	PDCD10	Q9BUL8	212 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	HINT2	Q9BX68	163 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	CACNG5	Q9UF02	275 aa		11.46	□□□□□ -0.58
BRCA1-223	ENST00000494123	APELA	P0DMC3	54 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	EGR2	P11161	476 aa	Predicted RBP	11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	CRIP2	P52943	208 aa	Predicted RBP	11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	AKIRIN2	Q53H80	203 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	ZNF329	Q86UD4	541 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	UXS1	Q8NBZ7	420 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR5AU1	Q8NGC0	362 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR1L8	Q8NGR8	309 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR5B3	Q8NH48	314 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	TMEM68	Q96MH6	324 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	MDFI	Q99750	246 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	TMEM14B	Q9NUH8	114 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	FOXA2	Q9Y261	457 aa	Predicted RBP	11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	TMED3	Q9Y3Q3	217 aa		11.45	□□□□□ -0.58
BRCA1-223	ENST00000494123	COL6A5	A8TX70	2615 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123		A0A0B4J293	547 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	TEX50	A0A1B0GTY4	177 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123		A0A1W2PN81	502 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	IFNA21	P01568	189 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	SULT1A3	P0DMM9	295 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	SULT1A4	P0DMN0	295 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	CHRNA7	P36544	502 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	KRTAP21-3	Q3LHN1	58 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	NMS	Q5H8A3	153 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	THOC7	Q6I9Y2	204 aa	Known RBP	11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	ZNF429	Q86V71	674 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	C12orf45	Q8N5I9	185 aa	Predicted RBP	11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	C3orf56	Q8N813	242 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR4X2	Q8NGF9	303 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	WFDC12	Q8WWY7	111 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	QTRT1	Q9BXR0	403 aa	Known RBP	11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	ZNF257	Q9Y2Q1	563 aa		11.44	□□□□□ -0.58
BRCA1-223	ENST00000494123	DBX1	A6NMT0	343 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123	IFNA17	P01571	189 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123	TRAPPC2	P0DI81	140 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123	TRAPPC2B	P0DI82	140 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123	SMCO1	Q147U7	214 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123	GGNBP1	Q5YKI7	109 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123	TEX38	Q6PEX7	206 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123		Q6ZRM9	215 aa		11.43	□□□□□ -0.58
BRCA1-223	ENST00000494123	HMX3	A6NHT5	357 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	TEX22	C9J3V5	150 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123		E7EUB6	86 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	ST8SIA3	O43173	380 aa		11.42	□□□□□ -0.58

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