RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 A0A1W2PPB8 328 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 A0A1W2PRS3 328 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 C17orf100A8MU93 164 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 KIR3DP1A8MWS1 328 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 CSRP1P21291 193 aaKnown RBP11.13□□□□□ -0.63
COL6A3-212ENST00000491769 IGHV1-2P23083 117 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 LEPP41159 167 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 LBHQ53QV2 105 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-212ENST00000491769 TMEM91Q6ZNR0 172 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 OR11H4Q8NGC9 324 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 C18orf15Q96N68 181 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 HLA-DRB1P01911 266 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 OR11H7Q8NGC8 314 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 M0QZK8 103 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 LILRA1O75019 489 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 MT-ND6P03923 174 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 SPSB4Q96A44 273 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 MRPL20Q9BYC9 149 aaKnown RBP11.12□□□□□ -0.63
COL6A3-212ENST00000491769 FAM206AQ9NX38 181 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 C19orf67A6NJJ6 358 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 HLA-DQA1P01909 254 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 TM4SF5O14894 197 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 FAM166AQ6J272 317 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 MIXL1Q9H2W2 232 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 C11orf68Q9H3H3 251 aaKnown RBP11.12□□□□□ -0.63
COL6A3-212ENST00000491769 H0YL77 283 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 PRSS53Q2L4Q9 553 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 UNQ6494/PRO21346Q6UXR6 183 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 V9GYH0 126 aa11.12□□□□□ -0.63
COL6A3-212ENST00000491769 BCORQ6W2J9 1755 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-212ENST00000491769 TMEM250H0YL14 139 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 CDK2AP2O75956 126 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 PAX1P15863 534 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 ZNF324BQ6AW86 544 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-212ENST00000491769 LINC00862A6NCI5 91 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 MSGN1A6NI15 193 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 KIAA1644Q3SXP7 199 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 TRIP12Q14669 1992 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-212ENST00000491769 MEF2BQ02080 365 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-212ENST00000491769 LEMD1Q68G75 181 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 UBE2V2Q15819 145 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 TBR1Q16650 682 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 ZNF585BQ52M93 769 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 SCGB3A1Q96QR1 104 aa11.11□□□□□ -0.63
COL6A3-212ENST00000491769 STRCQ7RTU9 1775 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 GRIFINA4D1Z8 144 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 GAGE10A6NGK3 116 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 SRIP30626 198 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 AQP3Q92482 292 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 SFRP2Q96HF1 295 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 LINC00527Q9UJ94 153 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 TRAV8-6A0A0B4J262 113 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 FAM90A26D6RGX4 464 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 GGCTO75223 188 aaKnown RBP11.1□□□□□ -0.63
COL6A3-212ENST00000491769 DSCR9P59020 149 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 BIVMQ86UB2 503 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 RNASEH2CQ8TDP1 164 aaKnown RBP11.1□□□□□ -0.63
COL6A3-212ENST00000491769 SIRT4Q9Y6E7 314 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-212ENST00000491769 LRP5O75197 1615 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 KLF4O43474 513 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 CELA3BP08861 270 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 RPL35AP18077 110 aaKnown RBP11.1□□□□□ -0.63
COL6A3-212ENST00000491769 KLK2P20151 261 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 TMEM136Q6ZRR5 245 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 HOXA5P20719 270 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 ZCCHC24Q8N2G6 241 aaKnown RBP11.1□□□□□ -0.63
COL6A3-212ENST00000491769 OR10S1Q8NGN2 331 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 CHCHD5Q9BSY4 110 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 C19orf24Q9BVV8 132 aa11.1□□□□□ -0.63
COL6A3-212ENST00000491769 NBR2O15453 112 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 IL6RP08887 468 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-212ENST00000491769 TXNDC17Q9BRA2 123 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 IFT22Q9H7X7 185 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 ICE1Q9Y2F5 2266 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 C1QL1O75973 258 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 KIR3DL3Q8N743 410 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 OSR1Q8TAX0 266 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-212ENST00000491769 PLXNB2O15031 1838 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 PEX7O00628 323 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 CCL3L1P16619 93 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 PHLDA1Q8WV24 401 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-212ENST00000491769 IFI27L2Q9H2X8 130 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 WNT2P09544 360 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 WDYHV1Q96HA8 205 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 CHCHD2Q9Y6H1 151 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-212ENST00000491769 RIPPLY3P57055 190 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 Q96M66 194 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 KBTBD11-OT1A0A1B0GTJ5 212 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 F12P00748 615 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-212ENST00000491769 CD8AP01732 235 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 PLP1P60201 277 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 JKAMPQ9P055 326 aa11.09□□□□□ -0.63
COL6A3-212ENST00000491769 RREB1Q92766 1687 aa11.08□□□□□ -0.63
COL6A3-212ENST00000491769 ABCA3Q99758 1704 aa11.08□□□□□ -0.63
COL6A3-212ENST00000491769 TRAV14DV4A0A0A6YYC5 116 aa11.08□□□□□ -0.64
COL6A3-212ENST00000491769 TTC32Q5I0X7 151 aa11.08□□□□□ -0.64
COL6A3-212ENST00000491769 ZNF708P17019 499 aa11.08□□□□□ -0.64
COL6A3-212ENST00000491769 EFNB1P98172 346 aa11.08□□□□□ -0.64
COL6A3-212ENST00000491769 MCM3APO60318 1980 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms