RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 CNBD2Q96M20 576 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 LINC00052Q96N35 136 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 OR52B2Q96RD2 323 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 PFDN5Q99471 154 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 B9D2Q9BPU9 175 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 C7orf50Q9BRJ6 194 aaKnown RBP0.77□□□□□ -2.29
SMC4-220ENST00000488017 ZNF426Q9BUY5 554 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 SNHG12Q9BXW3 62 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 TM6SF2Q9BZW4 377 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 TLNRD1Q9H1K6 362 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 MIXL1Q9H2W2 232 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 TRABDQ9H4I3 376 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 NIT2Q9NQR4 276 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 SLC2A9Q9NRM0 540 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 PLEKHJ1Q9NW61 149 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 DNAJC27Q9NZQ0 273 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 GSKIPQ9P0R6 139 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 DKKL1Q9UK85 242 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 DNAJC12Q9UKB3 198 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 SLC22A13Q9Y226 551 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 ALG5Q9Y673 324 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 FLT4P35916 1363 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 OVOS2A0A0J9YW53 1432 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 ATRNO75882 1429 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 FMN1Q68DA7 1419 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 OVOS2Q6IE36 1432 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 DENND4BO75064 1496 aaPredicted RBP0.77□□□□□ -2.29
SMC4-220ENST00000488017 ATP10BO94823 1461 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 GRIN2BQ13224 1484 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 CCDC18Q5T9S5 1454 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 CDK12Q9NYV4 1490 aaPredicted RBP0.77□□□□□ -2.29
SMC4-220ENST00000488017 ADGRB3O60242 1522 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 ABCC6O95255 1503 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 CDK13Q14004 1512 aaKnown RBP0.77□□□□□ -2.29
SMC4-220ENST00000488017 SAMD9Q5K651 1589 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 CEP170Q5SW79 1584 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 CDC42BPGQ6DT37 1551 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 CEP170BQ9Y4F5 1589 aaPredicted RBP0.77□□□□□ -2.29
SMC4-220ENST00000488017 MYO3AQ8NEV4 1616 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 PIK3C2AO00443 1686 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 MYOM1P52179 1685 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 TOPAZ1Q8N9V7 1692 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 FAM208AQ9UK61 1670 aaKnown RBP0.77□□□□□ -2.29
SMC4-220ENST00000488017 ROBO1Q9Y6N7 1651 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 LY75O60449 1722 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 SCN11AQ9UI33 1791 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 SIP14410 1827 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 TRPM6Q9BX84 2022 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 MED12LQ86YW9 2145 aa0.77□□□□□ -2.29
SMC4-220ENST00000488017 NINQ8N4C6 2090 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ATG2BQ96BY7 2078 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ZFC3H1O60293 1989 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 SCN9AQ15858 1988 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DOCK4Q8N1I0 1966 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OBSL1O75147 1896 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 CPAMD8Q8IZJ3 1885 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ZNF236Q9UL36 1845 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TJP1Q07157 1748 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 USP54Q70EL1 1684 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 USP32Q8NFA0 1604 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ARHGEF5Q12774 1597 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 MROH2BQ7Z745 1585 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DIP2CQ9Y2E4 1556 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 URB2Q14146 1524 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 EHBP1L1Q8N3D4 1523 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ERVK-7P63135 1459 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OVOS2A0A0G2JMS6 1433 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 PIK3C2GO75747 1445 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 BLMP54132 1417 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 ABCC12Q96J65 1359 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ABCB11O95342 1321 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TRBV24-1A0A075B6N3 115 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 IGHV1-45A0A0A0MS14 117 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 LOC100130705A0A1B0GUX0 176 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SPAARA0A1B0GVQ0 90 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 A0A1W2PRG6 482 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 VPS37CA5D8V6 355 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 CCDC160A6NGH7 325 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SMIM9A6NGZ8 99 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 A8MWP6 167 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 EVPLLA8MZ36 301 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR11H12B2RN74 326 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 C21orf140B9A014 251 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DISC1C4P0D8 188 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 G3V2T6 193 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 H3BSA7 217 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 J3QLI3 93 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 J3QRK9 145 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 M0QZ92 97 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SULT1C2O00338 296 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 CDIPTO14735 213 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 LECT2O14960 151 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 UBDO15205 165 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TGOLN2O43493 480 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 MFSD11O43934 449 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 GADD45GO95257 159 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SERPINA1P01009 418 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 IFNA21P01568 189 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 C1QBP02746 253 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 IGKV1-16P04430 117 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms