RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 COMPP49747 757 aaPredicted RBP8.12□□□□□ -1.11
USP39-215ENST00000481409 F2RL1P55085 397 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 RPL23AP62750 156 aaKnown RBP8.12□□□□□ -1.11
USP39-215ENST00000481409 VAMP2P63027 116 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 PRCDQ00LT1 54 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 DEFB112Q30KQ8 113 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 ZNF562Q6V9R5 426 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 VKORC1L1Q8N0U8 176 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 PIFOQ8TCI5 191 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 SMIM8Q96KF7 97 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 TMEM68Q96MH6 324 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 RASL11BQ9BPW5 248 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 HIPK2Q9H2X6 1198 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 ENY2Q9NPA8 101 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 PLSCR3Q9NRY6 295 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 OR51B2Q9Y5P1 312 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 CCDC168Q8NDH2 2452 aa8.12□□□□□ -1.11
USP39-215ENST00000481409 ITPR3Q14573 2671 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 TRAV14DV4A0A0A6YYC5 116 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 A6NDX4 124 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 H3BUX3 64 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 TSC22D2O75157 780 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 SCGB1D2O95969 90 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 S100A10P60903 97 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 RPL15P61313 204 aaKnown RBP8.11□□□□□ -1.11
USP39-215ENST00000481409 ZNF345Q14585 488 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 CXorf66Q5JRM2 361 aaPredicted RBP8.11□□□□□ -1.11
USP39-215ENST00000481409 RBMS3Q6XE24 437 aaKnown RBP8.11□□□□□ -1.11
USP39-215ENST00000481409 ZNF546Q86UE3 836 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 Q8N9W7 124 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 INO80EQ8NBZ0 244 aaPredicted RBP8.11□□□□□ -1.11
USP39-215ENST00000481409 DTD1Q8TEA8 209 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 WDR89Q96FK6 387 aaPredicted RBP8.11□□□□□ -1.11
USP39-215ENST00000481409 SLC25A33Q9BSK2 321 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 QTRT1Q9BXR0 403 aaKnown RBP8.11□□□□□ -1.11
USP39-215ENST00000481409 SLC25A31Q9H0C2 315 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 FBXL15Q9H469 300 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 ZNF430Q9H8G1 570 aaPredicted RBP8.11□□□□□ -1.11
USP39-215ENST00000481409 NDUFA4L2Q9NRX3 87 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 U3KQ87 197 aa8.11□□□□□ -1.11
USP39-215ENST00000481409 A0A0D9SG52 128 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 TEX50A0A1B0GTY4 177 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 NCBP2LA6PVI3 153 aaKnown RBP8.1□□□□□ -1.11
USP39-215ENST00000481409 CEBPZOSA8MTT3 80 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 G3V3Q6 166 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 KCNAB3O43448 404 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 CHST1O43916 411 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 LY6G6DO95868 133 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 RPL27AP46776 148 aaKnown RBP8.1□□□□□ -1.11
USP39-215ENST00000481409 POLR2GP62487 172 aaKnown RBP eCLIP8.1□□□□□ -1.11
USP39-215ENST00000481409 ERHP84090 104 aaKnown RBP8.1□□□□□ -1.11
USP39-215ENST00000481409 BAXQ07812 192 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 OR2F1Q13607 317 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 LRRC37A5PQ49AS3 106 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 CLEC9AQ6UXN8 241 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 ACOT7LQ6ZUV0 252 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 OR1L6Q8NGR2 347 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 RITA1Q96K30 269 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 AQP10Q96PS8 301 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 RNF126Q9BV68 326 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 RBKSQ9H477 322 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 PLEKHA3Q9HB20 300 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 LYRM2Q9NU23 88 aaPredicted RBP8.1□□□□□ -1.11
USP39-215ENST00000481409 MBD2Q9UBB5 411 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 ZNF580Q9UK33 172 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 VPREB3Q9UKI3 123 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 TNFSF18Q9UNG2 199 aa8.1□□□□□ -1.11
USP39-215ENST00000481409 RCL1Q9Y2P8 373 aaKnown RBP8.1□□□□□ -1.11
USP39-215ENST00000481409 LSM5Q9Y4Y9 91 aaKnown RBP8.1□□□□□ -1.11
USP39-215ENST00000481409 VPS13CQ709C8 3753 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 TRAV3A0A0B4J244 114 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 CLDN34H7C241 214 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 SSSCA1O60232 199 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 SRD5A1P18405 259 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 HTR2BP41595 481 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 HOXA1P49639 335 aaPredicted RBP8.09□□□□□ -1.11
USP39-215ENST00000481409 SUB1P53999 127 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP39-215ENST00000481409 OR2B8PP59922 312 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 HNF4GQ14541 408 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 TNXAQ16473 311 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 IZUMO4Q1ZYL8 232 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 MRGPRG-AS1Q2M3A8 158 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 OR2C3Q8N628 320 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 C5orf56Q8N8D9 126 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 DCUN1D4Q92564 292 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 JMJD8Q96S16 334 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 C11orf1Q9H5F2 150 aa8.09□□□□□ -1.11
USP39-215ENST00000481409 BAHCC1Q9P281 2608 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 FXYD6-FXYD2A0A087WZ82 144 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 H0YIZ8 118 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 CORTO00230 105 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 TAAR5O14804 337 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 CYB5BO43169 146 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 CNIH1O95406 144 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 CA2P00918 260 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 CD24P25063 80 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 CNTFRP26992 372 aa8.08□□□□□ -1.12
USP39-215ENST00000481409 VDAC2P45880 294 aaPredicted RBP8.08□□□□□ -1.12
USP39-215ENST00000481409 CRIP2P52943 208 aaPredicted RBP8.08□□□□□ -1.12
USP39-215ENST00000481409 RAB11AP62491 216 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms