RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TRGC1P0CF51 173 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 HIGD1AQ9Y241 93 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 FAM90A9PA6NNJ1 464 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 P01737 135 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 RNASEKQ6P5S7 137 aaKnown RBP12.22□□□□□ -0.45
HDAC6-220ENST00000477528 APOBEC3AP31941 199 aaPredicted RBP12.21□□□□□ -0.45
HDAC6-220ENST00000477528 TIMP3P35625 211 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 Q8WTZ3 238 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 LIME1Q9H400 295 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 SRD5A3Q9H8P0 318 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 RIF1Q5UIP0 2472 aaKnown RBP12.21□□□□□ -0.45
HDAC6-220ENST00000477528 SAA2-SAA4A0A096LPE2 208 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 CD55P08174 381 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 SAA2P0DJI9 122 aaPredicted RBP12.21□□□□□ -0.45
HDAC6-220ENST00000477528 TMEM183BQ1AE95 376 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 GATAD1Q8WUU5 269 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 TNFRSF19Q9NS68 423 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 RALYQ9UKM9 306 aaKnown RBP12.21□□□□□ -0.45
HDAC6-220ENST00000477528 SLC25A15Q9Y619 301 aa12.21□□□□□ -0.45
HDAC6-220ENST00000477528 FOXI3A8MTJ6 420 aaPredicted RBP12.21□□□□□ -0.46
HDAC6-220ENST00000477528 CLEC3BP05452 202 aa12.21□□□□□ -0.46
HDAC6-220ENST00000477528 OR1P1Q8NH06 330 aa12.21□□□□□ -0.46
HDAC6-220ENST00000477528 TMEM171Q8WVE6 324 aa12.21□□□□□ -0.46
HDAC6-220ENST00000477528 MRPL32Q9BYC8 188 aaKnown RBP12.21□□□□□ -0.46
HDAC6-220ENST00000477528 PTPRSQ13332 1948 aa12.21□□□□□ -0.46
HDAC6-220ENST00000477528 ICE1Q9Y2F5 2266 aa12.21□□□□□ -0.46
HDAC6-220ENST00000477528 TRAV1-1A0A0B4J248 108 aa12.21□□□□□ -0.46
HDAC6-220ENST00000477528 IGKV1-6A0A0C4DH72 117 aa12.21□□□□□ -0.46
HDAC6-220ENST00000477528 PPIAL4CA0A0B4J2A2 164 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 PPIAL4GP0DN37 164 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 COMPP49747 757 aaPredicted RBP12.2□□□□□ -0.46
HDAC6-220ENST00000477528 PLA2G2CQ5R387 149 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 LRP11Q86VZ4 500 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 GPR61Q9BZJ8 451 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 MT-ND6P03923 174 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 GPR6P46095 362 aaPredicted RBP12.2□□□□□ -0.46
HDAC6-220ENST00000477528 SPTBN2O15020 2390 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 IGKV3-15P01624 115 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 EGR1P18146 543 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 ARL16Q0P5N6 197 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 MST1LQ2TV78 715 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 SSC4DQ8WTU2 575 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 C15orf61A6NNL5 157 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 COL8A1P27658 744 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 RPL30P62888 115 aaKnown RBP12.2□□□□□ -0.46
HDAC6-220ENST00000477528 IBA57Q5T440 356 aaKnown RBP12.2□□□□□ -0.46
HDAC6-220ENST00000477528 MUC15Q8N387 334 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 CLEC7AQ9BXN2 247 aa12.2□□□□□ -0.46
HDAC6-220ENST00000477528 TMEM131Q92545 1883 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 A0A087X0M5 115 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 A0A1B0GX30 115 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 MLNRO43193 412 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 PKIAP61925 76 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 SFRP2Q96HF1 295 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 IFI27L2Q9H2X8 130 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 OR9G9P0C7N8 305 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 CRYBB3P26998 211 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 UBTD1Q9HAC8 227 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 MBD3L4A6NDZ8 208 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-220ENST00000477528 MBD3L3A6NE82 208 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-220ENST00000477528 MBD3L5A6NJ08 208 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-220ENST00000477528 COLCA2A8K830 154 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 SFTPCP11686 197 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 ADCYAP1P18509 176 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 CD177Q8N6Q3 437 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 MBD3L2Q8NHZ7 208 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-220ENST00000477528 OR51M1Q9H341 326 aa12.19□□□□□ -0.46
HDAC6-220ENST00000477528 ZNF503-AS2A6NEH8 195 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 IGFBP2P18065 325 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 HTR1DP28221 377 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 SRSF6Q13247 344 aaKnown RBP12.18□□□□□ -0.46
HDAC6-220ENST00000477528 SCGB2A2Q13296 93 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 FA2HQ7L5A8 372 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 VSIRQ9H7M9 311 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 TMEM14EPQ6UXP3 125 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 Q6ZSR3 168 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 NPIPB3Q92617 1050 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 COQ2Q96H96 371 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 WDR83OSQ9Y284 106 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 A0A0G2JRQ6 117 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 IGHV1-46P01743 117 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 APCSP02743 223 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 OR52E5Q8NH55 327 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 FAM222BQ8WU58 562 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 MBNL3Q9NUK0 354 aaKnown RBP12.18□□□□□ -0.46
HDAC6-220ENST00000477528 METRNQ9UJH8 293 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 HILPDAQ9Y5L2 63 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 OR8I2Q8N0Y5 310 aa12.18□□□□□ -0.46
HDAC6-220ENST00000477528 MRPL20Q9BYC9 149 aaKnown RBP12.18□□□□□ -0.46
HDAC6-220ENST00000477528 TRBV23-1A0A0A0MS06 115 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 UPK2O00526 184 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 PLAUP00749 431 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 ACAA1P09110 424 aaPredicted RBP12.17□□□□□ -0.46
HDAC6-220ENST00000477528 ARL2-SNX15V9GYD0 113 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 CACNA1HO95180 2353 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 ISLRO14498 428 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 FOLR2P14207 255 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 FAM169BQ8N8A8 192 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 SCNM1Q9BWG6 230 aa12.17□□□□□ -0.46
HDAC6-220ENST00000477528 LCN2P80188 198 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms