RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 RBFOX2O43251 390 aaKnown RBP eCLIP10.7□□□□□ -0.7
UPF3A-204ENST00000475218 NDUFB8O95169 186 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 HLA-AP01891 365 aaKnown RBP10.7□□□□□ -0.7
UPF3A-204ENST00000475218 NAT1P18440 290 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 GNRHRP30968 328 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 RFX2P48378 723 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 SPCS2Q15005 226 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 POU2AF1Q16633 256 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 RPEL1Q2QD12 228 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 SAMD12Q8N8I0 201 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 VSTM2AQ8TAG5 236 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 CCDC140Q96MF4 163 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 RCHY1Q96PM5 261 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 FYTTD1Q96QD9 318 aaKnown RBP10.7□□□□□ -0.7
UPF3A-204ENST00000475218 BET1LQ9NYM9 111 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 A8MZ25 164 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 EIF4EP06730 217 aaKnown RBP10.69□□□□□ -0.7
UPF3A-204ENST00000475218 CTRB1P17538 263 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 MAS1LP35410 378 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 KIR2DS2P43631 304 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 CBX5P45973 191 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 NCS1P62166 190 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 CTRB2Q6GPI1 263 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 DHRS11Q6UWP2 260 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 TMEM17Q86X19 198 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 LYSMD2Q8IV50 215 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 ZBTB34Q8NCN2 500 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 SLC25A46Q96AG3 418 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 S100A16Q96FQ6 103 aaKnown RBP10.69□□□□□ -0.7
UPF3A-204ENST00000475218 S4R3C0 116 aa10.69□□□□□ -0.7
UPF3A-204ENST00000475218 S1PR2O95136 353 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 HRASP01112 189 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 IGHV3-23P01764 117 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 REG1AP05451 166 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 HLA-GP17693 338 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 PSMB6P28072 239 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 PPP5CP53041 499 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 OR2B8PP59922 312 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 RPL8P62917 257 aaKnown RBP10.68□□□□□ -0.7
UPF3A-204ENST00000475218 OR51H1Q8NH63 302 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 DYNC2LI1Q8TCX1 351 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 TM2D3Q9BRN9 247 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 FBXL7Q9UJT9 491 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 DYNC2H1Q8NCM8 4307 aaKnown RBP10.68□□□□□ -0.7
UPF3A-204ENST00000475218 CSMD3Q7Z407 3707 aa10.68□□□□□ -0.7
UPF3A-204ENST00000475218 IGLC7A0M8Q6 106 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 NDUFA5Q16718 116 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 TMEM69Q5SWH9 247 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 SLC25A42Q86VD7 318 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 MOB3AQ96BX8 217 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 FXYD6Q9H0Q3 95 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 EHFQ9NZC4 300 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 IGLV11-55A0A075B6I3 123 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 UPK2O00526 184 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 PMP2P02689 132 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 EIF2B2P49770 351 aaKnown RBP10.67□□□□□ -0.7
UPF3A-204ENST00000475218 TAS2R31P59538 309 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 OR4A5Q8NH83 315 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 IFT46Q9NQC8 304 aa10.67□□□□□ -0.7
UPF3A-204ENST00000475218 MFSD2BA6NFX1 497 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 PGLYRP1O75594 196 aaPredicted RBP10.66□□□□□ -0.7
UPF3A-204ENST00000475218 OR2C1O95371 312 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 HPRT1P00492 218 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 VBP1P61758 197 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 ZNF585BQ52M93 769 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 GPX8Q8TED1 209 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 CHAC2Q8WUX2 184 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 ZNF2Q9BSG1 426 aaPredicted RBP10.66□□□□□ -0.7
UPF3A-204ENST00000475218 PLEKHA2Q9HB19 425 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 TMEM140Q9NV12 185 aa10.66□□□□□ -0.7
UPF3A-204ENST00000475218 RYR2Q92736 4967 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 ZNF785A8K8V0 405 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 H0Y980 276 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 RPA2P15927 270 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 NQO2P16083 231 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 CATR1Q13166 79 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 CD300EQ496F6 205 aaPredicted RBP10.65□□□□□ -0.7
UPF3A-204ENST00000475218 Q8N402 240 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 OR10W1Q8NGF6 305 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 KCTD12Q96CX2 325 aaKnown RBP10.65□□□□□ -0.7
UPF3A-204ENST00000475218 HRASLSQ9HDD0 168 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 STARD9Q9P2P6 4700 aa10.65□□□□□ -0.7
UPF3A-204ENST00000475218 C2orf70A6NJV1 201 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 PTTG1O95997 202 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 RLN1P04808 185 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 HRH1P35367 487 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 HERV-K104P61576 105 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 TATDN3Q17R31 274 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 DEFB114Q30KQ6 69 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 AADACL3Q5VUY0 350 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 LCN12Q6JVE5 192 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 CLEC19AQ6UXS0 136 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 CACNG8Q8WXS5 425 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 COMMD3Q9UBI1 195 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 PEMTQ9UBM1 199 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 SELENOKQ9Y6D0 94 aa10.65□□□□□ -0.71
UPF3A-204ENST00000475218 TENM2Q9NT68 2774 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 SACSQ9NZJ4 4579 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 LGALS9O00182 355 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 GGCTO75223 188 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms