RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TRGV8A0A0C4DH27 118 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 RTP5Q14D33 572 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 DNASE2BQ8WZ79 361 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 PLAC1Q9HBJ0 212 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 RUNX1Q01196 453 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 TMEM249Q2WGJ8 235 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 NPCDR1Q9BY65 106 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 CBLN1P23435 193 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 SF3B6Q9Y3B4 125 aaKnown RBP11.44□□□□□ -0.58
COL6A3-209ENST00000472056 EFNB2P52799 333 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 SUMO2P61956 95 aaKnown RBP11.44□□□□□ -0.58
COL6A3-209ENST00000472056 SRSF12Q8WXF0 261 aaKnown RBP11.44□□□□□ -0.58
COL6A3-209ENST00000472056 TRBV20OR9-2A0A075B6H5 130 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 VKORC1L1Q8N0U8 176 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 FAM181BA6NEQ2 426 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 COX7A1P24310 79 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 GCHFRP30047 84 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 TMEM187Q14656 261 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 NUTF2P61970 127 aaKnown RBP11.43□□□□□ -0.58
COL6A3-209ENST00000472056 ORMDL2Q53FV1 153 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 FAM106AQ4KMX7 169 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 MBNL2Q5VZF2 373 aaKnown RBP11.43□□□□□ -0.58
COL6A3-209ENST00000472056 OR4D11Q8NGI4 311 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 TM2D1Q9BX74 207 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 PGPA6NDG6 321 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 SRSF6Q13247 344 aaKnown RBP11.43□□□□□ -0.58
COL6A3-209ENST00000472056 DEFB109BQ30KR1 87 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 FAM90A1Q86YD7 464 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 ALKBH6Q3KRA9 238 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 MPZP25189 248 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 COL9A2Q14055 689 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-209ENST00000472056 BIVMQ86UB2 503 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 RNF182Q8N6D2 247 aa11.43□□□□□ -0.58
COL6A3-209ENST00000472056 NRXN2Q9P2S2 1712 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 ACSF3Q4G176 576 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-209ENST00000472056 hCG_38984A0A1B0GV85 526 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 STARD6P59095 220 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 NEU1Q99519 415 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 FAM159AQ6UWV7 190 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 KIR3DL3Q8N743 410 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 GTF3AQ92664 365 aaKnown RBP11.42□□□□□ -0.58
COL6A3-209ENST00000472056 RPP21Q9H633 154 aaKnown RBP11.42□□□□□ -0.58
COL6A3-209ENST00000472056 TINAGQ9UJW2 476 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 FOXC2Q99958 501 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 TMEM160Q9NX00 188 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 NLRC5Q86WI3 1866 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-209ENST00000472056 CT62P0C5K7 136 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 COL10A1Q03692 680 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 MGAT2Q10469 447 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 OSR1Q8TAX0 266 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-209ENST00000472056 AURKAIP1Q9NWT8 199 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-209ENST00000472056 TRAV1-1A0A0B4J248 108 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 RHOGP84095 191 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 GAGE2BQ13066 116 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 GAGE2EQ4V326 116 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 GAGE2DQ9UEU5 116 aa11.42□□□□□ -0.58
COL6A3-209ENST00000472056 A8MWV9 139 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 RRHO14718 337 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 RAX2Q96IS3 184 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 LINC00470Q9BZP3 86 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 C1QL1O75973 258 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 CNTFRP26992 372 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 FCGR2BP31994 310 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-209ENST00000472056 COX11Q9Y6N1 276 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 NAV3Q8IVL0 2385 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 CISD3P0C7P0 127 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 SNAI3Q3KNW1 292 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 OR52M1Q8NGK5 317 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 TRBV7-9A0A0J9YWB2 115 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 F2Z2F3 143 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 ZNF708P17019 499 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 GAGE13Q4V321 117 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 LHFPL4Q7Z7J7 247 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 OR11H4Q8NGC9 324 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 KCNK17Q96T54 332 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 ASCL2Q99929 193 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 OSTCQ9NRP0 149 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 TRBV24-1A0A075B6N3 115 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 UPK3AO75631 287 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 MIC13Q5XKP0 118 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 C19orf48Q6RUI8 117 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 SLC25A38Q96DW6 304 aa11.41□□□□□ -0.58
COL6A3-209ENST00000472056 DPM2O94777 84 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 UCP1P25874 307 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 LHX9Q9NQ69 397 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 CRYBB3P26998 211 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 RNFT1Q5M7Z0 435 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 DPH3Q96FX2 82 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 NABP2Q9BQ15 211 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 A0A1W2PRS3 328 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 GPX1P07203 203 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 SRP19P09132 144 aaKnown RBP11.4□□□□□ -0.58
COL6A3-209ENST00000472056 PDCD1Q15116 288 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 FSCN3Q9NQT6 498 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 PPIAL4EA0A075B759 164 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 PPIAL4DF5H284 164 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 PPIAL4FP0DN26 164 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 PPIAL4AQ9Y536 164 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 F8VVB4 439 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms