RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 IGHV1-69-2A0A0G2JMI3 117 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 FAM3BP58499 235 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 SPATA31B1PQ5VZV4 182 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 ODF3L1Q8IXM7 274 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 ZNF383Q8NA42 475 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 NANPQ8TBE9 248 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 LURAP1Q96LR2 239 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 IDI2-AS1Q9NZ38 188 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 IL19Q9UHD0 177 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 NCBP2LA6PVI3 153 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 ATP5G3P48201 142 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 CDSNQ15517 529 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 GAFA1Q96PS6 74 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 UHRF2Q96PU4 802 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 GSX1Q9H4S2 264 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 ZNF355PQ9NSJ1 428 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 C17orf112F2Z3M2 114 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 NDUFB4O95168 129 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 THBDP07204 575 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 IGFBP2P18065 325 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 S100A2P29034 98 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 TCL1AP56279 114 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 BRWD1-AS2P59051 145 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 RBMS3Q6XE24 437 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 LSM10Q969L4 123 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 SSX3Q99909 188 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 SELENOKQ9Y6D0 94 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 IFNL4K9M1U5 179 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 TMPRSS3P57727 454 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 RAB31Q13636 194 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 SPSB3Q6PJ21 355 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 CIB3Q96Q77 187 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 OR5B12Q96R08 314 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 IFI27L2Q9H2X8 130 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 PXMP4Q9Y6I8 212 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 CSMD1Q96PZ7 3565 aa11.31□□□□□ -0.6
CCDC88A-211ENST00000471947 FLNCQ14315 2725 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 C11orf94C9JXX5 98 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 RAB13P51153 203 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 ICAM4Q14773 271 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 MRGPRGQ86SM5 289 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 SLC24A4Q8NFF2 622 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 OR2T6Q8NHC8 308 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 FLYWCH2Q96CP2 140 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 DERL1Q9BUN8 251 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 UNKLQ9H9P5 680 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 KIAA1456Q9P272 454 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 J3QW42 95 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 BCL2P10415 239 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 OR10J1P30954 320 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 NHLH1Q02575 133 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 TMEM200BQ69YZ2 307 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 HIST1H2BAQ96A08 127 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 NPCDR1Q9BY65 106 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 JPT1Q9UK76 154 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 MOSP00540 346 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 HRASP01112 189 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 CD5P06127 495 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 ZNF726P1Q15940 193 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 RNF212Q495C1 297 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 PNKDQ8N490 385 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 EIF4E3Q8N5X7 224 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 C12orf57Q99622 126 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 SLX1AQ9BQ83 275 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 AGMATQ9BSE5 352 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 TNFRSF19Q9NS68 423 aa11.3□□□□□ -0.6
CCDC88A-211ENST00000471947 C15orf65H3BRN8 121 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 H7BYZ3 331 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 K7ENP7 123 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 SRP19P09132 144 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 KLRD1Q13241 179 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 PSG5Q15238 335 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 SSX2Q16385 188 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 ACOT6Q3I5F7 207 aaPredicted RBP11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 TMEM41BQ5BJD5 291 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 RPEQ96AT9 228 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 GAL3ST2Q9H3Q3 398 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 SAA1P0DJI8 122 aaPredicted RBP11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 ARL14EPLP0DKL9 152 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 S100PP25815 95 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 LRRC75BQ2VPJ9 315 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 IGFL3Q6UXB1 125 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 ZNF295-AS1Q8N0V1 137 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 MARVELD3Q96A59 401 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 INSIG2Q9Y5U4 225 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 SRRM4A7MD48 611 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 CEACAM4O75871 244 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 TMEM11P17152 192 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 CEACAM8P31997 349 aaPredicted RBP11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 C17orf58Q2M2W7 97 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 ZNF66Q6ZN08 573 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 ZNF561Q8N587 486 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 OR9G1Q8NH87 305 aa11.29□□□□□ -0.6
CCDC88A-211ENST00000471947 DUXBA0A1W2PPF3 345 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 TRGC2P03986 189 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 RAB5AP20339 215 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 CNTFRP26992 372 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 UQCRFS1P47985 274 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 RAB7AP51149 207 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 C9orf152Q5JTZ5 239 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms