RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 DPM3Q9P2X0 92 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 CHTOPQ9Y3Y2 248 aaKnown RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 HILPDAQ9Y5L2 63 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 ACANP16112 2415 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 ABCA1O95477 2261 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.78□□□□□ -1.82e-10■■□□□ 12.8
SF3B1-208ENST00000470268 IGHV3-72A0A0B4J1Y9 119 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 IGHV1-3A0A0C4DH29 117 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 C13orf42A0A1B0GVH6 325 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 CRYM-AS1A6NIL9 109 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 LEUTXA8MZ59 168 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TEX46H3BTG2 121 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 SPRY2O43597 315 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 RAMP3O60896 148 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 IGKV1-16P04430 117 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 CD24P25063 80 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 RAB13P51153 203 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 RND3P61587 244 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 SUMO2P61956 95 aaKnown RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 DHODHQ02127 395 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF816Q0VGE8 651 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 MIDNQ504T8 468 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF585BQ52M93 769 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 OR2B11Q5JQS5 317 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TPTE2P1Q5T6R2 138 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 WDR73Q6P4I2 378 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 Q6YL49 198 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TBC1D26Q86UD7 250 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 OR51H1Q8NH63 302 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 NANPQ8TBE9 248 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 FAM216AQ8WUB2 273 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 AKR1E2Q96JD6 320 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 OR10C1Q96KK4 312 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 PRR25Q96S07 402 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TP53RKQ96S44 253 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 NABP2Q9BQ15 211 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 ALX4Q9H161 411 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 HIVEP1P15822 2718 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 PCP4L1A6NKN8 68 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 H0YJW9 148 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TIMM23O14925 209 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TXNL1O43396 289 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 IGKV1-39P01597 117 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 IGKV1D-39P04432 117 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 HOXB5P09067 269 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 GIPP09681 153 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 OR5AC1P0C628 307 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 F2RP25116 425 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 MSMO1Q15800 293 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TMEM128Q5BJH2 165 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 MINOS1Q5TGZ0 78 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 FAM71F2Q6NXP2 309 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 LPCAT3Q6P1A2 487 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 Q6ZWC4 215 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF767PQ75MW2 155 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TGIF2LXQ8IUE1 241 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 CMTM1Q8IZ96 169 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 OR5M8Q8NGP6 311 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 LHFPL5Q8TAF8 219 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 PIFOQ8TCI5 191 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 GLYATL2Q8WU03 294 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 MITD1Q8WV92 249 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 RPEQ96AT9 228 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 MALSU1Q96EH3 234 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 RITA1Q96K30 269 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF48Q96MX3 618 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 S1PR3Q99500 378 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 RANBP3Q9H6Z4 567 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 NAA60Q9H7X0 242 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 C14orf166Q9Y224 244 aaKnown RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 TBL2Q9Y4P3 447 aaKnown RBP3.78□□□□□ -1.8
SF3B1-208ENST00000470268 MINOS1-NBL1R4GNA1 71 aa3.78□□□□□ -1.8
SF3B1-208ENST00000470268 WNK2Q9Y3S1 2297 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 C3orf85A0A1B0GTC6 90 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 SRRM4A7MD48 611 aaKnown RBP3.77□□□□□ -1.81
SF3B1-208ENST00000470268 INAFM1C9JVW0 142 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 H0YIZ8 118 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 FCGR3BO75015 233 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 SFT2D2O95562 160 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 GAPDHP04406 335 aaKnown RBP3.77□□□□□ -1.81
SF3B1-208ENST00000470268 TMEM187Q14656 261 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 DEFB112Q30KQ8 113 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 ABCA11PQ4W5N1 156 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 CCDC144NLQ6NUI1 221 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 TEX261Q6UWH6 196 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 ZNF66Q6ZN08 573 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 C9orf139Q6ZV77 190 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 FOXRED2Q8IWF2 684 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 SPAG16Q8N0X2 631 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 PPP1R1CQ8WVI7 109 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 TCTEX1D2Q8WW35 142 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 GALNT14Q96FL9 552 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 SCGB3A2Q96PL1 93 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 HSD17B10Q99714 261 aaKnown RBP3.77□□□□□ -1.81
SF3B1-208ENST00000470268 PDCD10Q9BUL8 212 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 SEPSECSQ9HD40 501 aaKnown RBP3.77□□□□□ -1.81
SF3B1-208ENST00000470268 AMMECR1Q9Y4X0 333 aaPredicted RBP3.77□□□□□ -1.81
SF3B1-208ENST00000470268 U3KQ87 197 aa3.77□□□□□ -1.81
SF3B1-208ENST00000470268 TEX13DA0A0J9YY54 714 aaPredicted RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms