RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 RPL8P62917 257 aaKnown RBP11.62□□□□□ -0.55
COL9A3-209ENST00000469852 SRSF4Q08170 494 aaKnown RBP11.62□□□□□ -0.55
COL9A3-209ENST00000469852 C19orf54Q5BKX5 351 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 ASPHD1Q5U4P2 390 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 Q6ZRM9 215 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 H2BFWTQ7Z2G1 175 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 MMD2Q8IY49 270 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 STPG2Q8N412 459 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 OR4A5Q8NH83 315 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 ABHD5Q8WTS1 349 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 SRSF12Q8WXF0 261 aaKnown RBP11.62□□□□□ -0.55
COL9A3-209ENST00000469852 IL22RA2Q969J5 263 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 A0A0B4J293 547 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 AP4M1O00189 453 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 CNIH1O95406 144 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 PTTG1O95997 202 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 HLA-GP17693 338 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 CRIP2P52943 208 aaPredicted RBP11.61□□□□□ -0.55
COL9A3-209ENST00000469852 CFHR3Q02985 330 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 ECSCRQ19T08 205 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 PLET1Q6UQ28 207 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 ZNF329Q86UD4 541 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 FOXRED2Q8IWF2 684 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 CADM3Q8N126 398 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 LGI3Q8N145 548 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 LRTM2Q8N967 370 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 GPR146Q96CH1 333 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 MARVELD1Q9BSK0 173 aa11.61□□□□□ -0.55
COL9A3-209ENST00000469852 A0A0B4J2A0 478 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 TEX50A0A1B0GTY4 177 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 HMX3A6NHT5 357 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 MSGN1A6NI15 193 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 C15orf61A6NNL5 157 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 TEX22C9J3V5 150 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 INMT-MINDY4F8WBC2 141 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 ADAP1O75689 374 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 DUS4LO95620 317 aaKnown RBP11.6□□□□□ -0.55
COL9A3-209ENST00000469852 NMSQ5H8A3 153 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 LFNGQ8NES3 379 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 SGMS2Q8NHU3 365 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 WFDC12Q8WWY7 111 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 QTRT1Q9BXR0 403 aaKnown RBP11.6□□□□□ -0.55
COL9A3-209ENST00000469852 TMEM14BQ9NUH8 114 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 SHPKQ9UHJ6 478 aa11.6□□□□□ -0.55
COL9A3-209ENST00000469852 TRAV41A0A0B4J266 112 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 A0A1B0GUS0 222 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 SOX15O60248 233 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 CREBL2O60519 120 aaPredicted RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 ACTL6BO94805 426 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 HOXB5P09067 269 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 PPIFP30405 207 aaKnown RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 MAS1LP35410 378 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 RPL27AP46776 148 aaKnown RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 SRPXP78539 464 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 C19orf35Q6ZS72 473 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 C11orf44Q8N8P7 122 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 RNASE11Q8TAA1 199 aaKnown RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 ZNF431Q8TF32 576 aaPredicted RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 MITD1Q8WV92 249 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 LSM10Q969L4 123 aaKnown RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 RRNAD1Q96FB5 475 aaKnown RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 FYTTD1Q96QD9 318 aaKnown RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 ZNF580Q9UK33 172 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 FOXA2Q9Y261 457 aaPredicted RBP11.59□□□□□ -0.55
COL9A3-209ENST00000469852 OR51B2Q9Y5P1 312 aa11.59□□□□□ -0.55
COL9A3-209ENST00000469852 PSMB11A5LHX3 300 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 MPTX1A8MV57 137 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 SNAPC5O75971 98 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 ATG12O94817 140 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 IL5P05113 134 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 VDAC1P21796 283 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 RGS21Q2M5E4 152 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 SPINK9Q5DT21 86 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 TCTEX1D4Q5JR98 221 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 UNQ5815/PRO19632Q6UWF5 114 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 LCNL1Q6ZST4 164 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 CENPVQ7Z7K6 275 aaPredicted RBP11.58□□□□□ -0.56
COL9A3-209ENST00000469852 FAM219AQ8IW50 185 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 MINDY2Q8NBR6 621 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 OR10W1Q8NGF6 305 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 OR4A16Q8NH70 328 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 CHPT1Q8WUD6 406 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 PHB2Q99623 299 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 CACNG5Q9UF02 275 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 PRNDQ9UKY0 176 aa11.58□□□□□ -0.56
COL9A3-209ENST00000469852 A0A1W2PN81 502 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 ST8SIA3O43173 380 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 NXPH3O95157 252 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 FGF2P09038 288 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 CD28P10747 220 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 AREGP15514 252 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 CHRNA7P36544 502 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 AKIRIN2Q53H80 203 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 GGNBP1Q5YKI7 109 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 OR5AU1Q8NGC0 362 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 COQ8AQ8NI60 647 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 COMMD5Q9GZQ3 224 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 NDUFA4L2Q9NRX3 87 aa11.57□□□□□ -0.56
COL9A3-209ENST00000469852 DUXBA0A1W2PPF3 345 aa11.56□□□□□ -0.56
COL9A3-209ENST00000469852 IGLC7A0M8Q6 106 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms