RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PTX4Q96A99 478 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 DAZAP1Q96EP5 407 aaKnown RBP3.76□□□□□ -1.81
PTPN4-209ENST00000469511 CPNE2Q96FN4 548 aaPredicted RBP3.76□□□□□ -1.81
PTPN4-209ENST00000469511 NEDD4LQ96PU5 975 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 RNF2Q99496 336 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF436Q9C0F3 470 aaPredicted RBP3.76□□□□□ -1.81
PTPN4-209ENST00000469511 OR2D2Q9H210 308 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF446Q9NWS9 450 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 PAK1IP1Q9NWT1 392 aaPredicted RBP3.76□□□□□ -1.81
PTPN4-209ENST00000469511 CLEC5AQ9NY25 188 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 RDH8Q9NYR8 311 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 ABRACLQ9P1F3 81 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 AK3Q9UIJ7 227 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF221Q9UK13 617 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 RPL36Q9Y3U8 105 aaKnown RBP3.76□□□□□ -1.81
PTPN4-209ENST00000469511 IGLV11-55A0A075B6I3 123 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 IGHV3-21A0A0B4J1V1 117 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 TRBV5-5A0A0J9YX44 114 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 SAC3D1A6NKF1 404 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 G3V2T6 193 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 J3QRK9 145 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 DYNC1I1O14576 645 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 SOCS1O15524 211 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 HNRNPCP07910 306 aaKnown RBP eCLIP3.75□□□□□ -1.81
PTPN4-209ENST00000469511 GABRB1P18505 474 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 C4BPBP20851 252 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 ZBTB25P24278 435 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 ETV1P50549 477 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 GBX2P52951 348 aaPredicted RBP3.75□□□□□ -1.81
PTPN4-209ENST00000469511 ELLP55199 621 aaPredicted RBP3.75□□□□□ -1.81
PTPN4-209ENST00000469511 XGP55808 180 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 SNRPGP62308 76 aaKnown RBP3.75□□□□□ -1.81
PTPN4-209ENST00000469511 PPP3R1P63098 170 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 HLA-DRB3P79483 266 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 UNC119Q13432 240 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 GPR176Q14439 515 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 IGSF11Q5DX21 431 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 OR2B11Q5JQS5 317 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 OR4A47Q6IF82 309 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 TMEM88Q6PEY1 159 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 NR2C2APQ86WQ0 139 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 UBE2DNLQ8IWF7 75 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 OR52I1Q8NGK6 324 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 OR6M1Q8NGM8 313 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF502Q8TBZ5 544 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 TMEM190Q8WZ59 177 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 EEF1AKMT3Q96AZ1 226 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 FYTTD1Q96QD9 318 aaKnown RBP3.75□□□□□ -1.81
PTPN4-209ENST00000469511 NDUFAF3Q9BU61 184 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 GABARAPL3Q9BY60 117 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 GABARAPL1Q9H0R8 117 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 CHMP1AQ9HD42 196 aaPredicted RBP3.75□□□□□ -1.81
PTPN4-209ENST00000469511 Q9N2K0 584 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF257Q9Y2Q1 563 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 LRRC42Q9Y546 428 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 ETV7Q9Y603 341 aa3.75□□□□□ -1.81
PTPN4-209ENST00000469511 TRBV5-7A0A0A0MS05 114 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 OR4C46A6NHA9 309 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 C15orf61A6NNL5 157 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 NPIPB5A8MRT5 1133 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF705EA8MWA4 302 aaPredicted RBP3.74□□□□□ -1.81
PTPN4-209ENST00000469511 OGG1O15527 345 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 APOHP02749 345 aaPredicted RBP3.74□□□□□ -1.81
PTPN4-209ENST00000469511 CD2P06729 351 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 CRYGCP07315 174 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 GALP22466 123 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 PSMB6P28072 239 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 DUTP33316 252 aaKnown RBP3.74□□□□□ -1.81
PTPN4-209ENST00000469511 CAPGP40121 348 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 PCP4P48539 62 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 TMEM50BP56557 158 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 BRWD1-AS2P59051 145 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 DEFB131AP59861 70 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 RPL30P62888 115 aaKnown RBP3.74□□□□□ -1.81
PTPN4-209ENST00000469511 RPS27AP62979 156 aaKnown RBP3.74□□□□□ -1.81
PTPN4-209ENST00000469511 VAMP2P63027 116 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 FHL2Q14192 279 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 INSL4Q14641 139 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 CDK10Q15131 360 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 MED22Q15528 200 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 SMN1Q16637 294 aaKnown RBP3.74□□□□□ -1.81
PTPN4-209ENST00000469511 KLK9Q2XQG4 91 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 VMA21Q3ZAQ7 101 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 PLET1Q6UQ28 207 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 ARHGAP24Q8N264 748 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 CSNK1G2-AS1Q8NCQ2 148 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 GIMAP1Q8WWP7 306 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 MAFIPQ8WZ33 124 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 MARC2Q969Z3 335 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 PGLYRP3Q96LB9 341 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 C18orf15Q96N68 181 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 SPIN2AQ99865 258 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 SPIN2BQ9BPZ2 258 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 C20orf24Q9BUV8 137 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 SLC2A9Q9NRM0 540 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 CLEC2DQ9UHP7 191 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 SMPXQ9UHP9 88 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 KLK9Q9UKQ9 250 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 UFC1Q9Y3C8 167 aa3.74□□□□□ -1.81
PTPN4-209ENST00000469511 TRBV6-6A0A0A6YYG2 114 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms