RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 CTDSP1Q9GZU7 261 aa6.39□□□□□ -1.39
USP4-207ENST00000462673 HIPK2Q9H2X6 1198 aa6.39□□□□□ -1.39
USP4-207ENST00000462673 SLC2A9Q9NRM0 540 aa6.39□□□□□ -1.39
USP4-207ENST00000462673 TMEM242Q9NWH2 141 aa6.39□□□□□ -1.39
USP4-207ENST00000462673 HSF4Q9ULV5 492 aa6.39□□□□□ -1.39
USP4-207ENST00000462673 LINC00312Q9Y6C7 94 aa6.39□□□□□ -1.39
USP4-207ENST00000462673 TRBV24-1A0A075B6N3 115 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 TGIF2-C20orf24A0A0A6YYL0 155 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 TMEM30CPA0ZSE6 113 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 IGSF23A1L1A6 192 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 CLDN34H7C241 214 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 PDCD6O75340 191 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 LY86O95711 162 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 PRTN3P24158 256 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 CEACAM6P40199 344 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 NKX2-1P43699 371 aaPredicted RBP6.38□□□□□ -1.39
USP4-207ENST00000462673 CEBPGP53567 150 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 PRRX1P54821 245 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 PAX2Q02962 417 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 AESQ08117 197 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 EDDM3AQ14507 147 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 TMEM30BQ3MIR4 351 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 PIGYQ3MUY2 71 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 CDPF1Q6NVV7 123 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 ZNF343Q6P1L6 599 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 Q6P435 159 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 RNASEH2CQ8TDP1 164 aaKnown RBP6.38□□□□□ -1.39
USP4-207ENST00000462673 NDUFAF3Q9BU61 184 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 GPR61Q9BZJ8 451 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 C11orf1Q9H5F2 150 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 LYRM2Q9NU23 88 aaPredicted RBP6.38□□□□□ -1.39
USP4-207ENST00000462673 TRAPPC2LQ9UL33 140 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 RNF150Q9ULK6 438 aa6.38□□□□□ -1.39
USP4-207ENST00000462673 IGKV1D-8A0A087WSZ0 117 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 TRAV1-1A0A0B4J248 108 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 A0A1B0GU03 582 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 ODAMA1E959 279 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 C17orf98A8MV24 154 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 TRDCB7Z8K6 153 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 C22orf46C9J442 243 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 SPINT2O43291 252 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 SSSCA1O60232 199 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 PSPNO60542 156 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 GCGP01275 180 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 TRGC2P03986 189 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 TRGC1P0CF51 173 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 BCL2P10415 239 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 BTF3P20290 206 aaKnown RBP6.37□□□□□ -1.39
USP4-207ENST00000462673 CEBPDP49716 269 aaPredicted RBP6.37□□□□□ -1.39
USP4-207ENST00000462673 UBE2E1P51965 193 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 RIPPLY3P57055 190 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 FXYD4P59646 89 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 RPL23AP62750 156 aaKnown RBP6.37□□□□□ -1.39
USP4-207ENST00000462673 KRTAP1-1Q07627 177 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 HAGHQ16775 308 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 PHLDA2Q53GA4 152 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 CRIP3Q6Q6R5 217 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 RNF144BQ7Z419 303 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 C6orf201Q7Z4U5 140 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 LYZL2Q7Z4W2 148 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 VMO1Q7Z5L0 202 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 MRPL52Q86TS9 123 aaKnown RBP6.37□□□□□ -1.39
USP4-207ENST00000462673 CMTM1Q8IZ96 169 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 H1FOOQ8IZA3 346 aaPredicted RBP6.37□□□□□ -1.39
USP4-207ENST00000462673 BEND2Q8NDZ0 799 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 OR1P1Q8NH06 330 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 ZNF596Q8TC21 504 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 P2RX4Q99571 388 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 ATP5SQ99766 215 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 RARRES2Q99969 163 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 PRO1933Q9H354 126 aa6.37□□□□□ -1.39
USP4-207ENST00000462673 TRAV24A0A0B4J272 114 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 KBTBD11-OT1A0A1B0GTJ5 212 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 ZNF727A8MUV8 499 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 PPP5D1E7EU14 171 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 HSPB6O14558 160 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 IFNA5P01569 189 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 CEACAM3P40198 252 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 OR3A1P47881 315 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 TAS2R30P59541 319 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 HOXA4Q00056 320 aaPredicted RBP6.36□□□□□ -1.39
USP4-207ENST00000462673 NHLH2Q02577 135 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 JOSD1Q15040 202 aaPredicted RBP6.36□□□□□ -1.39
USP4-207ENST00000462673 USF2Q15853 346 aaPredicted RBP6.36□□□□□ -1.39
USP4-207ENST00000462673 PDZD11Q5EBL8 140 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 SLC25A24Q6NUK1 477 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 SLC35G3Q8N808 338 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 OR52M1Q8NGK5 317 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 FRZBQ92765 325 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 TNFRSF14Q92956 283 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 LHX4Q969G2 390 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 ZDHHC16Q969W1 377 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 ACY3Q96HD9 319 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 HIST1H2BLQ99880 126 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 HDHD3Q9BSH5 251 aaPredicted RBP6.36□□□□□ -1.39
USP4-207ENST00000462673 ACTR3CQ9C0K3 210 aaPredicted RBP6.36□□□□□ -1.39
USP4-207ENST00000462673 SIRPDQ9H106 197 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 SRD5A3Q9H8P0 318 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 IL36RNQ9UBH0 155 aa6.36□□□□□ -1.39
USP4-207ENST00000462673 URGCP-MRPS24S4R325 110 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms