RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 GZMBP10144 247 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM11P17152 192 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 CCDC144NLQ6NUI1 221 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 ACP7Q6ZNF0 438 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 MDP1Q86V88 176 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 LYG1Q8N1E2 194 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 EP300Q09472 2414 aaPredicted RBP5.94□□□□□ -1.46
SYNE1-216ENST00000461872 LOC101059948A0A1B0GTJ6 334 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 PFN1P07737 140 aaKnown RBP5.94□□□□□ -1.46
SYNE1-216ENST00000461872 ARF6P62330 175 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 C3orf36Q3SXR2 165 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 CIARTQ8N365 385 aaPredicted RBP5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM171Q8WVE6 324 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 PAM16Q9Y3D7 125 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 SRXN1Q9BYN0 137 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TRBV23-1A0A0A0MS06 115 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 LMO1P25800 156 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 SAMD13Q5VXD3 122 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 FAM103A1Q9BTL3 118 aaKnown RBP5.93□□□□□ -1.46
SYNE1-216ENST00000461872 IGHV3-9P01782 118 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 PPBPP02775 128 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 SOD3P08294 240 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 LINC00696Q6ZRV3 163 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 FAM231DQ6ZW35 169 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 OR2T6Q8NHC8 308 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 C12orf77C9JDV5 145 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 SLC25A48Q6ZT89 311 aaKnown RBP5.93□□□□□ -1.46
SYNE1-216ENST00000461872 PRSS3P2Q8NHM4 247 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 C14orf144Q96I85 54 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 SPOCK3Q9BQ16 436 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 CALYQ9NYX4 217 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 C1RLQ9NZP8 487 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 IGHV1-69-2A0A0G2JMI3 117 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 UMODP07911 640 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 COL8A1P27658 744 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 VWC2Q2TAL6 325 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 RPP25LQ8N5L8 163 aaKnown RBP5.93□□□□□ -1.46
SYNE1-216ENST00000461872 WASHC3Q9Y3C0 194 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 KRTAP27-1Q3LI81 207 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 PPP1R32Q7Z5V6 425 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 ZIC4Q8N9L1 334 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 TRAV24A0A0B4J272 114 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 BHLHA15Q7RTS1 189 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-216ENST00000461872 HARBI1Q96MB7 349 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF319Q9P2F9 582 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 RNF151Q2KHN1 245 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 CENPWQ5EE01 88 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 OR9G4Q8NGQ1 327 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 SMPXQ9UHP9 88 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 LRP4O75096 1905 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 A0A1B0GV90 55 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 PRRG2O14669 202 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 PSG9Q00887 426 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 C2orf83Q53S99 150 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 SRSF8Q9BRL6 282 aaKnown RBP5.93□□□□□ -1.46
SYNE1-216ENST00000461872 SLC25A33Q9BSK2 321 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 LAMTOR2Q9Y2Q5 125 aa5.93□□□□□ -1.46
SYNE1-216ENST00000461872 CLDN18P56856 261 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 EAF1Q96JC9 268 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-216ENST00000461872 PILRBQ9UKJ0 227 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1D-8A0A087WSZ0 117 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 CXCL1P09341 107 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 FABP2P12104 132 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 GLRXP35754 106 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 ID4P47928 161 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 TNFAIP6P98066 277 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-216ENST00000461872 CDX2Q99626 313 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-216ENST00000461872 NABP2Q9BQ15 211 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 AP5S1Q9NUS5 200 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 CX3CL1P78423 397 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 KRTCAP3Q53RY4 240 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 RBPMS2Q6ZRY4 209 aaKnown RBP5.92□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM251Q8N6I4 163 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 TNFRSF19Q9NS68 423 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 RIF1Q5UIP0 2472 aaKnown RBP5.92□□□□□ -1.46
SYNE1-216ENST00000461872 C16orf47Q6ZP98 133 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-216ENST00000461872 TCF24Q7RTU0 167 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 DYRK2Q92630 601 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 HIGD1AQ9Y241 93 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 ROS1P08922 2347 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 PCNX2A6NKB5 2137 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 SAA2-SAA4A0A096LPE2 208 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 KIR2DL5BA0A0G2JN68 375 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 KIR2DL5BA0A0G2JPC4 375 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 MT-CO3P00414 261 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 ESDP10768 282 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 GFRA1P56159 465 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 PRCDQ00LT1 54 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 BOD1L2Q8IYS8 172 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 KIR2DL5AQ8N109 375 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 OR4X2Q8NGF9 303 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 OR5A1Q8NGJ0 315 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF596Q8TC21 504 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 FAM122AQ96E09 287 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 GPR82Q96P67 336 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 RNF5Q99942 180 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 CBLN4Q9NTU7 201 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF585BQ52M93 769 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 WIPF2Q8TF74 440 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-216ENST00000461872 RASL11BQ9BPW5 248 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms