RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 TRAPPC2P0DI81 140 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 TRAPPC2BP0DI82 140 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 AKR1C2P52895 323 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 QTRT1Q9BXR0 403 aaKnown RBP8.38□□□□□ -1.07
UBR4-208ENST00000459947 LINC00205P59089 165 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 NDPQ00604 133 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 MZT2BQ6NZ67 158 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 KLHL30-AS1Q8NEE0 82 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 LFNGQ8NES3 379 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 ATP6V0BQ99437 205 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 TMEM222Q9H0R3 208 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 AKIP1Q9NQ31 210 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 OR8U8P0C7N1 319 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 RAB9AP51151 201 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 RAB25P57735 213 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 KLK9Q2XQG4 91 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 LGI3Q8N145 548 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 ZNF491Q8N8L2 437 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 LSM10Q969L4 123 aaKnown RBP8.37□□□□□ -1.07
UBR4-208ENST00000459947 KLK9Q9UKQ9 250 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 RAMP3O60896 148 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 LY86O95711 162 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 LGALS1P09382 135 aaKnown RBP8.37□□□□□ -1.07
UBR4-208ENST00000459947 BRWD1-AS2P59051 145 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 ZNF585BQ52M93 769 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 ZNF329Q86UD4 541 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 OR4D10Q8NGI6 311 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 DPF1Q92782 380 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 TPSG1Q9NRR2 321 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 COA4Q9NYJ1 87 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 TRGV3P03979 118 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 EGR2P11161 476 aaPredicted RBP8.37□□□□□ -1.07
UBR4-208ENST00000459947 RBPMSQ93062 196 aaKnown RBP8.37□□□□□ -1.07
UBR4-208ENST00000459947 RCC1LQ96I51 464 aaKnown RBP8.37□□□□□ -1.07
UBR4-208ENST00000459947 VPS13CQ709C8 3753 aa8.37□□□□□ -1.07
UBR4-208ENST00000459947 MSGN1A6NI15 193 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 C15orf61A6NNL5 157 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 IL7P13232 177 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 TPPP2P59282 170 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 SSX9Q7RTT3 188 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 NOXA1Q86UR1 476 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 ZNF429Q86V71 674 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 FYTTD1Q96QD9 318 aaKnown RBP8.36□□□□□ -1.07
UBR4-208ENST00000459947 ZNF355PQ9NSJ1 428 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 MXRA5Q9NR99 2828 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 LINC01548A6NM66 108 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 ADARB2-AS1A8MUL3 147 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 CRYGCP07315 174 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 ZP3P21754 424 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 DCTN2Q13561 401 aaKnown RBP8.36□□□□□ -1.07
UBR4-208ENST00000459947 TMEM128Q5BJH2 165 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 CENPSQ8N2Z9 138 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 NECAP1Q8NC96 275 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 ENY2Q9NPA8 101 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 GAR1Q9NY12 217 aaKnown RBP8.36□□□□□ -1.07
UBR4-208ENST00000459947 LINC00527Q9UJ94 153 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 G3V318 75 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 KRASP01116 189 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 PSMB6P28072 239 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 TCTEX1D4Q5JR98 221 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 SEC22AQ96IW7 307 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 C5orf66Q9H5L9 145 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 OR51B2Q9Y5P1 312 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 TMEM56-RWDD3S4R434 201 aa8.36□□□□□ -1.07
UBR4-208ENST00000459947 RPLP1P05386 114 aaKnown RBP8.35□□□□□ -1.07
UBR4-208ENST00000459947 C11orf44Q8N8P7 122 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 ADAD2Q8NCV1 583 aaKnown RBP8.35□□□□□ -1.07
UBR4-208ENST00000459947 RTBDNQ9BSG5 229 aaPredicted RBP8.35□□□□□ -1.07
UBR4-208ENST00000459947 INS-IGF2F8WCM5 200 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 CDS2O95674 445 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 CD33P20138 364 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 DEFA1P59665 94 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 DEFA3P59666 94 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 OR2B8PP59922 312 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 HSPE1P61604 102 aaKnown RBP8.35□□□□□ -1.07
UBR4-208ENST00000459947 OR52E5Q8NH55 327 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 FAM210AQ96ND0 272 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 FBXO7Q9Y3I1 522 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 RBMXL2O75526 392 aaKnown RBP8.35□□□□□ -1.07
UBR4-208ENST00000459947 SCGB2A1O75556 95 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 NDUFB6O95139 128 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 TSPAN15O95858 294 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 G6PCP35575 357 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 SUB1P53999 127 aaKnown RBP eCLIP8.35□□□□□ -1.073e-8■■■■□ 20.2
UBR4-208ENST00000459947 ATP5IP56385 69 aaPredicted RBP8.35□□□□□ -1.07
UBR4-208ENST00000459947 ERHP84090 104 aaKnown RBP8.35□□□□□ -1.07
UBR4-208ENST00000459947 ATP5G2Q06055 141 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 PJVKQ0ZLH3 352 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 WFDC9Q8NEX5 89 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 CXorf58Q96LI9 332 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 TMEM14BQ9NUH8 114 aa8.35□□□□□ -1.07
UBR4-208ENST00000459947 A0A0B4J2A0 478 aa8.34□□□□□ -1.07
UBR4-208ENST00000459947 HSPB1P04792 205 aaKnown RBP8.34□□□□□ -1.07
UBR4-208ENST00000459947 MECP2P51608 486 aaKnown RBP8.34□□□□□ -1.07
UBR4-208ENST00000459947 SRSF4Q08170 494 aaKnown RBP8.34□□□□□ -1.07
UBR4-208ENST00000459947 TATDN3Q17R31 274 aa8.34□□□□□ -1.07
UBR4-208ENST00000459947 MRGPRG-AS1Q2M3A8 158 aa8.34□□□□□ -1.07
UBR4-208ENST00000459947 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.34□□□□□ -1.07
UBR4-208ENST00000459947 SHPKQ9UHJ6 478 aa8.34□□□□□ -1.07
UBR4-208ENST00000459947 CCL24O00175 119 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms