RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TMEM217Q8N7C4 229 aa9.95□□□□□ -0.82
HMGB3-204ENST00000448905 CACNG8Q8WXS5 425 aa9.95□□□□□ -0.82
HMGB3-204ENST00000448905 CCDC140Q96MF4 163 aa9.95□□□□□ -0.82
HMGB3-204ENST00000448905 SRSF8Q9BRL6 282 aaKnown RBP9.95□□□□□ -0.82
HMGB3-204ENST00000448905 BET1LQ9NYM9 111 aa9.95□□□□□ -0.82
HMGB3-204ENST00000448905 KLK5Q9Y337 293 aaPredicted RBP9.95□□□□□ -0.82
HMGB3-204ENST00000448905 S4R3C0 116 aa9.95□□□□□ -0.82
HMGB3-204ENST00000448905 IGKV1D-13A0A0B4J2D9 117 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 SPRY2O43597 315 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 C8orf88P0DMB2 117 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 IGKV1-13P0DP09 117 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 EDN2P20800 178 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 PTBP1P26599 531 aaKnown RBP eCLIP9.94□□□□□ -0.82
HMGB3-204ENST00000448905 HSPA13P48723 471 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 BTNL8Q6UX41 500 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 SPAG16Q8N0X2 631 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 STPG3Q8N7X2 389 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 CD300LFQ8TDQ1 290 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 SECTM1Q8WVN6 248 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 LINC00476Q8WZB0 136 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 SPAG8Q99932 426 aaPredicted RBP9.94□□□□□ -0.82
HMGB3-204ENST00000448905 C5orf66Q9H5L9 145 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 SELENOKQ9Y6D0 94 aa9.94□□□□□ -0.82
HMGB3-204ENST00000448905 IGLV11-55A0A075B6I3 123 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 TMEM235A6NFC5 223 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 RBFOX2O43251 390 aaKnown RBP eCLIP9.93□□□□□ -0.82
HMGB3-204ENST00000448905 HPRT1P00492 218 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 REG1AP05451 166 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 NQO2P16083 231 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 FCGR2CP31995 323 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 TAS2R31P59538 309 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 TNFRSF9Q07011 255 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 CATR1Q13166 79 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 PMS2P11Q13670 270 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 CEMP1Q6PRD7 247 aaPredicted RBP9.93□□□□□ -0.82
HMGB3-204ENST00000448905 C19orf35Q6ZS72 473 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 HSD17B13Q7Z5P4 300 aaPredicted RBP9.93□□□□□ -0.82
HMGB3-204ENST00000448905 WFDC3Q8IUB2 231 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 NUDCD2Q8WVJ2 157 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 BORCS5Q969J3 196 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 DAPK2Q9UIK4 370 aa9.93□□□□□ -0.82
HMGB3-204ENST00000448905 KIR2DL5BA0A0G2JN68 375 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 KIR2DL5BA0A0G2JPC4 375 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 TNFSF12O43508 249 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 MRPS14O60783 128 aaKnown RBP9.92□□□□□ -0.82
HMGB3-204ENST00000448905 FGF2P09038 288 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 FGF9P31371 208 aaPredicted RBP9.92□□□□□ -0.82
HMGB3-204ENST00000448905 GPR183P32249 361 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 CMC4P56277 68 aaPredicted RBP9.92□□□□□ -0.82
HMGB3-204ENST00000448905 BRWD1-AS2P59051 145 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 OR2B8PP59922 312 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 EIF4EBP1Q13541 118 aaPredicted RBP9.92□□□□□ -0.82
HMGB3-204ENST00000448905 THOC7Q6I9Y2 204 aaKnown RBP9.92□□□□□ -0.82
HMGB3-204ENST00000448905 KIR2DL5AQ8N109 375 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 BEST4Q8NFU0 473 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 DMBX1Q8NFW5 382 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 KIR2DL5BQ8NHK3 375 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 VN1R17PQ8TDU5 208 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 C6orf62Q9GZU0 229 aaPredicted RBP9.92□□□□□ -0.82
HMGB3-204ENST00000448905 CCL28Q9NRJ3 127 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 SSR3Q9UNL2 185 aa9.92□□□□□ -0.82
HMGB3-204ENST00000448905 A0A0J9YWU9 116 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 A0A1B0GW64 132 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 SULT1C2O00338 296 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 UPK2O00526 184 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 TSPAN4O14817 238 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 TRAPPC2P0DI81 140 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 TRAPPC2BP0DI82 140 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 ATF4P18848 351 aaPredicted RBP9.91□□□□□ -0.82
HMGB3-204ENST00000448905 TIMM50Q3ZCQ8 353 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 SLC25A24Q6NUK1 477 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 SPSB3Q6PJ21 355 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 UNQ9165/PRO28630Q6UXU0 137 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 LYG2Q86SG7 212 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 ZNF502Q8TBZ5 544 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 NRG4Q8WWG1 115 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 CNBD2Q96M20 576 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 QTRT1Q9BXR0 403 aaKnown RBP9.91□□□□□ -0.82
HMGB3-204ENST00000448905 SLC5A7Q9GZV3 580 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 DAZ1Q9NQZ3 744 aaKnown RBP9.91□□□□□ -0.82
HMGB3-204ENST00000448905 DIABLOQ9NR28 239 aa9.91□□□□□ -0.82
HMGB3-204ENST00000448905 RRP15Q9Y3B9 282 aaKnown RBP9.91□□□□□ -0.82
HMGB3-204ENST00000448905 TRAV18A0A075B6X5 111 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 IGHV3-35A0A0C4DH35 117 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 SMIM30A4D0T7 59 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 MFSD2BA6NFX1 497 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 OR4C46A6NHA9 309 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 TGOLN2O43493 480 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 SSX5O60225 188 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 PPYP01298 95 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 ERVK-16P61578 105 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 NR2C2APQ86WQ0 139 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 HOGA1Q86XE5 327 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 OR13F1Q8NGS4 319 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 GIMAP1Q8WWP7 306 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 BSCL2Q96G97 398 aaPredicted RBP9.9□□□□□ -0.82
HMGB3-204ENST00000448905 GPHA2Q96T91 129 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 ATP6V0BQ99437 205 aa9.9□□□□□ -0.82
HMGB3-204ENST00000448905 ZNF436Q9C0F3 470 aaPredicted RBP9.9□□□□□ -0.82
HMGB3-204ENST00000448905 PLEKHA2Q9HB19 425 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms