RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 COX7A2LO14548 114 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 NANOS2P60321 138 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 OR8B8Q15620 311 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 CST6Q15828 149 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 C1orf174Q8IYL3 243 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 C15orf40Q8WUR7 153 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 L3HYPDHQ96EM0 354 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 PDXPQ96GD0 296 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 DOHHQ9BU89 302 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 SMIM3Q9BZL3 60 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 PBOV1Q9GZY1 135 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IFI27L2Q9H2X8 130 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 C11orf68Q9H3H3 251 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 TPT1P8Q9HAU6 139 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 JPT1Q9UK76 154 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 MYO18BQ8IUG5 2567 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IGLV1-50A0A075B6I6 118 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IGKV2D-30A0A075B6S6 120 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV5-51A0A0C4DH38 117 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 DUXBA0A1W2PPF3 345 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 DPRXA6NFQ7 191 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF207O43670 478 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 NRASP01111 189 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 HRASP01112 189 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 KRASP01116 189 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 OPN1SWP03999 348 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 UBBP0CG47 229 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 MEOX2P50222 304 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 Q1RN00 199 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 PLPPR5Q32ZL2 321 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 CGB2Q6NT52 195 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 TIFABQ6ZNK6 161 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 Q6ZS49 121 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF429Q86V71 674 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 UMODL1-AS1Q8N2C9 162 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 SLC22A24Q8N4F4 322 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 OR2M3Q8NG83 312 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 OR4K5Q8NGD3 323 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 OR4A5Q8NH83 315 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 RBPMSQ93062 196 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 TSPAN32Q96QS1 320 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 FBXL12Q9NXK8 326 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 CKLFQ9UBR5 152 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 TRAPPC2LQ9UL33 140 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 LAMTOR2Q9Y2Q5 125 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV3-49A0A0A0MS15 119 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 J3QR89 54 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 SRSF10O75494 262 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 CDS2O95674 445 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IGLV2-23P01705 113 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 APCSP02743 223 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV4-34P06331 123 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 ATP5G3P48201 142 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 WDR59Q6PJI9 974 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 LYPD2Q6UXB3 125 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 LRP11Q86VZ4 500 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 SGPP2Q8IWX5 399 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 LRRC18Q8N456 261 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 POM121L12Q8N7R1 296 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 OR5A1Q8NGJ0 315 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 FRZBQ92765 325 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM203Q969S6 136 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 CCL13Q99616 98 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 TCEAL7Q9BRU2 100 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 GNG8Q9UK08 70 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 RFX7Q2KHR2 1363 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 CHD2O14647 1828 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 A0A0J9YWU9 116 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ZFP92A6NM28 416 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 LINC00587B1AMM8 73 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ATP6V1G2-DDX39BF2Z307 99 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF354AO60765 605 aaPredicted RBP1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 PIAS1O75925 651 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 IGLV2-8P01709 118 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ATP6V0CP27449 155 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF136P52737 540 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 HOXC5Q00444 222 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 Q6Q795 121 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 IL34Q6ZMJ4 242 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 CD177Q8N6Q3 437 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 SUMF2Q8NBJ7 301 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 MRPL30Q8TCC3 161 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 NARS2Q96I59 477 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 OR2J1Q9GZK6 312 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 MYO5CQ9NQX4 1742 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 CA10Q9NS85 328 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 C21orf62Q9NYP8 219 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 CYSLTR1Q9Y271 337 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 NRXN3Q9Y4C0 1643 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 IGKV6-21A0A0C4DH24 114 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM269A0A1B0GVZ9 245 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 CASP1P29466 404 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 G6PCP35575 357 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 TAS2R45P59539 299 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 TNFAIP6P98066 277 aaPredicted RBP1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 LTC4SQ16873 150 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 KRTAP27-1Q3LI81 207 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 SCXQ7RTU7 201 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 LINC01551Q86U37 167 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms