RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 Q6YL49 198 aa18.35■□□□□ 0.53
CPSF4-204ENST00000436336 ZNF48Q96MX3 618 aaPredicted RBP18.35■□□□□ 0.53
CPSF4-204ENST00000436336 RBM14Q96PK6 669 aaKnown RBP18.35■□□□□ 0.53
CPSF4-204ENST00000436336 MAGT1Q9H0U3 335 aa18.35■□□□□ 0.53
CPSF4-204ENST00000436336 RCL1Q9Y2P8 373 aaKnown RBP18.35■□□□□ 0.53
CPSF4-204ENST00000436336 H0YIZ8 118 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 MED6O75586 246 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 DEDDO75618 318 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 IFNA17P01571 189 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 SLC25A4P12235 298 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 MAS1LP35410 378 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 IER3P46695 156 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 SPCS3P61009 180 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 HSPE1P61604 102 aaKnown RBP18.34■□□□□ 0.53
CPSF4-204ENST00000436336 CLEC9AQ6UXN8 241 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 OR5B3Q8NH48 314 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 SLC25A33Q9BSK2 321 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 RNF126Q9BV68 326 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 COMMD5Q9GZQ3 224 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 NAV3Q8IVL0 2385 aa18.34■□□□□ 0.53
CPSF4-204ENST00000436336 A6NDX4 124 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 SYNGR2O43760 224 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 OR2F2O95006 317 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 HNRNPCP07910 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
CPSF4-204ENST00000436336 LYL1P12980 280 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 TUSC1Q2TAM9 212 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 Q8N9W7 124 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 OR5R1Q8NH85 324 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 MBD2Q9UBB5 411 aa18.33■□□□□ 0.52
CPSF4-204ENST00000436336 CYSRT1A8MQ03 144 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 PJVKQ0ZLH3 352 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 NOXA1Q86UR1 476 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 HYLS1Q96M11 299 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 CLCC1Q96S66 551 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 RBKSQ9H477 322 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 OR5AC2Q9NZP5 309 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 PLXNB1O43157 2135 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 TEX50A0A1B0GTY4 177 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 SSSCA1O60232 199 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 ACTL6BO94805 426 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 MYOD1P15172 320 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 PVALBP20472 110 aaPredicted RBP18.32■□□□□ 0.52
CPSF4-204ENST00000436336 SCGB2A2Q13296 93 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 LY6EQ16553 131 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 TMEM219Q86XT9 240 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 OR11H4Q8NGC9 324 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 MOB4Q9Y3A3 225 aa18.32■□□□□ 0.52
CPSF4-204ENST00000436336 ZFHX3Q15911 3703 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 ANK3Q12955 4377 aaKnown RBP18.31■□□□□ 0.52
CPSF4-204ENST00000436336 SETXQ7Z333 2677 aaKnown RBP18.31■□□□□ 0.52
CPSF4-204ENST00000436336 E5RGE8 158 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 BOLA2-SMG1P6H3BVE0 249 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 FGF16O43320 207 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 CHST1O43916 411 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 IGHV4-59P01825 116 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 C16orf82Q7Z2V1 217 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 OR1L8Q8NGR8 309 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 RAB40CQ96S21 281 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 RASL11BQ9BPW5 248 aa18.31■□□□□ 0.52
CPSF4-204ENST00000436336 FXYD6-FXYD2A0A087WZ82 144 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 BTBD17A6NE02 478 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 CEBPZOSA8MTT3 80 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 FCN1O00602 326 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 CA2P00918 260 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 PRCDQ00LT1 54 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 TNXAQ16473 311 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 SSMEM1Q8WWF3 244 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 C11orf1Q9H5F2 150 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 CDC42EP3Q9UKI2 254 aa18.3■□□□□ 0.52
CPSF4-204ENST00000436336 L7N2F9 121 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 OPN1MWP04001 364 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 OPN1MW2P0DN77 364 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 OPN1MW3P0DN78 364 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 COMPP49747 757 aaPredicted RBP18.29■□□□□ 0.52
CPSF4-204ENST00000436336 VAMP2P63027 116 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 TMEM65Q6PI78 240 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 C5orf56Q8N8D9 126 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 DTD1Q8TEA8 209 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 DCUN1D4Q92564 292 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 NDUFA4L2Q9NRX3 87 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 HMSDA8MTL9 139 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 SPINK9Q5DT21 86 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 ZNF546Q86UE3 836 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 SIGLECL1Q8N7X8 197 aa18.29■□□□□ 0.52
CPSF4-204ENST00000436336 CIB3Q96Q77 187 aaPredicted RBP18.29■□□□□ 0.52
CPSF4-204ENST00000436336 LY86O95711 162 aa18.28■□□□□ 0.52
CPSF4-204ENST00000436336 HLA-DRB1P01911 266 aa18.28■□□□□ 0.52
CPSF4-204ENST00000436336 IAPPP10997 89 aa18.28■□□□□ 0.52
CPSF4-204ENST00000436336 RPL27AP46776 148 aaKnown RBP18.28■□□□□ 0.52
CPSF4-204ENST00000436336 GNB1P62873 340 aa18.28■□□□□ 0.52
CPSF4-204ENST00000436336 SSBP2P81877 361 aaPredicted RBP18.28■□□□□ 0.52
CPSF4-204ENST00000436336 HINT2Q9BX68 163 aa18.28■□□□□ 0.52
CPSF4-204ENST00000436336 WSB1Q9Y6I7 421 aa18.28■□□□□ 0.52
CPSF4-204ENST00000436336 SONP18583 2426 aaKnown RBP18.28■□□□□ 0.52
CPSF4-204ENST00000436336 M0QZK8 103 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 HOXA1P49639 335 aaPredicted RBP18.27■□□□□ 0.52
CPSF4-204ENST00000436336 PAX9P55771 341 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 TAS2R30P59541 319 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 C10orf55Q5SWW7 151 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 ZNF562Q6V9R5 426 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms