RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 PAXXQ9BUH6 204 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 SRXN1Q9BYN0 137 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 NMNAT2Q9BZQ4 307 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 ATG5Q9H1Y0 275 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM38AQ9H6F2 299 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 Q9N2K0 584 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 COA3Q9Y2R0 106 aaPredicted RBP2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 MYH8P13535 1937 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 TRAV30A0A087WSZ9 112 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC00473A8K010 186 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 IGHA1P01876 353 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 IDO1P14902 403 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 PRDX6P30041 224 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 KCNJ3P48549 501 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 GBX2P52951 348 aaPredicted RBP2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 PSG7Q13046 419 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 PPP1R1AQ13522 171 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 MUC21Q5SSG8 566 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 C9orf153Q5TBE3 101 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 MRM1Q6IN84 353 aaKnown RBP2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 OR2G3Q8NGZ4 309 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 TNFRSF14Q92956 283 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 SLAMF9Q96A28 289 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 FGGYQ96C11 551 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 OR7D2Q96RA2 312 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 MRPL57Q9BQC6 102 aaKnown RBP2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 LIMD2Q9BT23 127 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 SYT4Q9H2B2 425 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 PRSS21Q9Y6M0 314 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 RLFQ13129 1914 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 ZSWIM8A7E2V4 1837 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 COL4A3Q01955 1670 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM159BA6NKW6 160 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 H7C1C5 153 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 MYL12BO14950 172 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 AGPAT2O15120 278 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 IGLV3-25P01717 112 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC00032P0C843 101 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 PVALBP20472 110 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 FXYD4P59646 89 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 LCN6P62502 163 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 TFF3Q07654 80 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 BAXQ07812 192 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 SCARB2Q14108 478 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 HCP5Q6MZN7 132 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 REEP3Q6NUK4 255 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 LYZL1Q6UWQ5 148 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 LYZL2Q7Z4W2 148 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 BCDIN3DQ7Z5W3 292 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM19A2Q8N3H0 131 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 OR4S2Q8NH73 311 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 MRPL18Q9H0U6 180 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 CALYQ9NYX4 217 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 CMYA5Q8N3K9 4069 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 PHF3Q92576 2039 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 SPAG7O75391 227 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 SLC22A5O76082 557 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 SULT1A1P50225 295 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 RPL32P62910 135 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 SSBP2P81877 361 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 KIAA0087Q14695 138 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 NR1I3Q14994 352 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 CEACAM21Q3KPI0 293 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM30BQ3MIR4 351 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 C1orf137Q5JT78 98 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 TMPRSS11AQ6ZMR5 421 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 Q6ZSA8 131 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF627Q7L945 461 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 PRSS35Q8N3Z0 413 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM169BQ8N8A8 192 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 CNBD2Q96M20 576 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 ANKRD60Q9BZ19 345 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 TOMM7Q9P0U1 55 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 Q9UF83 564 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 TNFRSF18Q9Y5U5 241 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 IER3IP1Q9Y5U9 82 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 IGHV3-64A0A075B6Q5 118 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 PRSS46E5RG02 174 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 G3V318 75 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 GABRPO00591 440 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 MMP23AO75900 390 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 CCNKO75909 580 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 PTHLHP12272 177 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 RAB5BP61020 215 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 POLR2GP62487 172 aaKnown RBP eCLIP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 RPL19P84098 196 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 LYPD2Q6UXB3 125 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 SPAG16Q8N0X2 631 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 CLEC4FQ8N1N0 589 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 SETD9Q8NE22 299 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 OR1L8Q8NGR8 309 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 FCRL1Q96LA6 429 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 C8orf49Q96NF6 230 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 KRTAP4-8Q9BYQ9 185 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 ANKRD19PQ9H560 264 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 NOP10Q9NPE3 64 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 TAS2R3Q9NYW6 316 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 DCDC2Q9UHG0 476 aa2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 DIMT1Q9UNQ2 313 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-205ENST00000426576 LYRM9A8MSI8 78 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms