RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 FAM90A2PQ658T7 463 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 ZNF841Q6ZN19 808 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 MRPL30Q8TCC3 161 aaKnown RBP8.3□□□□□ -1.08
USP54-205ENST00000424265 RNF138Q8WVD3 245 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 NPVFQ9HCQ7 196 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 DUSP13Q9UII6 198 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 URB1O60287 2271 aaKnown RBP8.3□□□□□ -1.08
USP54-205ENST00000424265 DYNLT3P51808 116 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 UBE2G1P62253 170 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 ZBTB34Q8NCN2 500 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 DAZAP1Q96EP5 407 aaKnown RBP8.3□□□□□ -1.08
USP54-205ENST00000424265 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.3□□□□□ -1.08
USP54-205ENST00000424265 TRAV8-6A0A0B4J262 113 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 KBTBD11-OT1A0A1B0GTJ5 212 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 LYZL6O75951 148 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 GNG3P63215 75 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 ZFAND6Q6FIF0 208 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 VSTM2AQ8TAG5 236 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 TMEM59Q9BXS4 323 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 A0A0G2JLM5 398 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 A0A1W2PR80 420 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 RER1O15258 196 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 IL11P20809 199 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 TCL1AP56279 114 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 OR8B12Q8NGG6 310 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 RNF183Q96D59 192 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 NEIL1Q96FI4 390 aaPredicted RBP8.29□□□□□ -1.08
USP54-205ENST00000424265 PMCHL2Q9BQD1 86 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 MRM2Q9UI43 246 aaKnown RBP8.29□□□□□ -1.08
USP54-205ENST00000424265 ZNF257Q9Y2Q1 563 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 ZNF728P0DKX0 622 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 RUNX1Q01196 453 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 OR4A5Q8NH83 315 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 C19orf24Q9BVV8 132 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 NUPR1O60356 82 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 UPK3AO75631 287 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 C3orf79P0CE67 100 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 JPT1Q9UK76 154 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 ADAMTS9Q9P2N4 1935 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 TYMSP04818 313 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 IGFBP2P18065 325 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 NANOS3P60323 173 aaKnown RBP8.29□□□□□ -1.08
USP54-205ENST00000424265 SPSB3Q6PJ21 355 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 ADAMTSL5Q6ZMM2 481 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 DNM1P46Q6ZS02 220 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 PRR7Q8TB68 274 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 PYGO2Q9BRQ0 406 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 MS4A5Q9H3V2 200 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 FAM206AQ9NX38 181 aa8.29□□□□□ -1.08
USP54-205ENST00000424265 PCDH15Q96QU1 1955 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 TEX48A0A1B0GUV7 120 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 GPX1P07203 203 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 PLAC9Q5JTB6 97 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 NPFFR1Q9GZQ6 430 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 UTRNP46939 3433 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 BMPR1BO00238 502 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 PHF1O43189 567 aaPredicted RBP8.28□□□□□ -1.08
USP54-205ENST00000424265 VAX1Q5SQQ9 334 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 FAM162BQ5T6X4 162 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 ZNRF4Q8WWF5 429 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 MUC6Q6W4X9 2439 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 DEGS1O15121 323 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 SNU13P55769 128 aaKnown RBP8.28□□□□□ -1.08
USP54-205ENST00000424265 WDR38Q5JTN6 314 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 NAA38Q9BRA0 125 aaKnown RBP8.28□□□□□ -1.08
USP54-205ENST00000424265 SCRT1Q9BWW7 348 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 QTRT1Q9BXR0 403 aaKnown RBP8.28□□□□□ -1.08
USP54-205ENST00000424265 C9orf118A6NHY6 69 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 ZNF324O75467 553 aaPredicted RBP8.28□□□□□ -1.08
USP54-205ENST00000424265 TIMM23BQ5SRD1 257 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 OR10G8Q8NGN5 311 aa8.28□□□□□ -1.08
USP54-205ENST00000424265 RNFT1Q5M7Z0 435 aa8.27□□□□□ -1.08
USP54-205ENST00000424265 SOX21Q9Y651 276 aaPredicted RBP8.27□□□□□ -1.08
USP54-205ENST00000424265 GPR82Q96P67 336 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 ZNF331Q9NQX6 463 aaPredicted RBP8.27□□□□□ -1.09
USP54-205ENST00000424265 ERG28Q9UKR5 140 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 RNF115Q9Y4L5 304 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 SCN2AQ99250 2005 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 CCDC88CQ9P219 2028 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 hCG_38984A0A1B0GV85 526 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 PINLYPA6NC86 204 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 GGNQ86UU5 652 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 TAAR6Q96RI8 345 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 RTN4RQ9BZR6 473 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 OR4C46A6NHA9 309 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 VENTXO95231 258 aa8.27□□□□□ -1.09
USP54-205ENST00000424265 RTBDNQ9BSG5 229 aaPredicted RBP8.27□□□□□ -1.09
USP54-205ENST00000424265 M0QXV9 152 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 AGFG2O95081 481 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 NXPH3O95157 252 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 LINC00869P0C866 280 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 B3GALT5-AS1P59052 145 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 PIGTQ969N2 578 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 TAAR3PQ9P1P4 343 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 ENSAO43768 121 aaKnown RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 RPS27P42677 84 aaKnown RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 TCTAP57738 103 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 MEF2CQ06413 473 aaPredicted RBP8.26□□□□□ -1.09
USP54-205ENST00000424265 SP6Q3SY56 376 aa8.26□□□□□ -1.09
USP54-205ENST00000424265 ZNF324BQ6AW86 544 aaPredicted RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms