RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF600Q6ZNG1 722 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 OR10G4Q8NGN3 311 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 OR10G9Q8NGN4 311 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 OR10G7Q8NGN6 311 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 MALSU1Q96EH3 234 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 LINC00052Q96N35 136 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 PFDN5Q99471 154 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 TRIOO75962 3097 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 A8MXK9 166 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 IGHV2-5P01817 119 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 MMDQ15546 238 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 Q6ZRM9 215 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 RASL11BQ9BPW5 248 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 SEC11CQ9BY50 192 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 SLC45A2Q9UMX9 530 aa6.85□□□□□ -1.31
USP54-203ENST00000418501 PRUNE2Q8WUY3 3088 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 TRAV1-1A0A0B4J248 108 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 IGHV2-70DA0A0C4DH43 119 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 A0A1B0GW64 132 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 MAP1LC3B2A6NCE7 125 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 INS-IGF2F8WCM5 200 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 IGFBP2P18065 325 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 CDC34P49427 236 aaPredicted RBP6.84□□□□□ -1.31
USP54-203ENST00000418501 ELLP55199 621 aaPredicted RBP6.84□□□□□ -1.31
USP54-203ENST00000418501 DLX6P56179 175 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 GNB1P62873 340 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 IZUMO4Q1ZYL8 232 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 KHDC3LQ587J8 217 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 PCNPQ8WW12 178 aaKnown RBP6.84□□□□□ -1.31
USP54-203ENST00000418501 MAP1LC3BQ9GZQ8 125 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 C11orf1Q9H5F2 150 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 AGPAT2O15120 278 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 SIAH2O43255 324 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 KCNAB3O43448 404 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 SLC25A17O43808 307 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 OPRK1P41145 380 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 UBE2E1P51965 193 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 BTN1A1Q13410 526 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 TUSC1Q2TAM9 212 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 TMEM68Q96MH6 324 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 SLC35B3Q9H1N7 401 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 BEX4Q9NWD9 120 aaPredicted RBP6.84□□□□□ -1.31
USP54-203ENST00000418501 TMEM218A2RU14 115 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 OR13C7P0DN81 318 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 HIST1H1BP16401 226 aaKnown RBP6.84□□□□□ -1.31
USP54-203ENST00000418501 PAX9P55771 341 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 RHEBQ15382 184 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 SP5Q6BEB4 398 aaPredicted RBP6.84□□□□□ -1.31
USP54-203ENST00000418501 STXBP6Q8NFX7 210 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 CYYR1Q96J86 154 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 PITPNC1Q9UKF7 332 aa6.84□□□□□ -1.31
USP54-203ENST00000418501 SPENQ96T58 3664 aaKnown RBP6.84□□□□□ -1.32
USP54-203ENST00000418501 TRAV20A0A0B4J274 112 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 NBR2O15453 112 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 ZNF841Q6ZN19 808 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 TCF23Q7RTU1 214 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 P2RX4Q99571 388 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 SIRT7Q9NRC8 400 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 WDR83OSQ9Y284 106 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 DYSFO75923 2080 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 TEX50A0A1B0GTY4 177 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 RBFOX3A6NFN3 312 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 M0R036 132 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 CLEC9AQ6UXN8 241 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 BTF3L4Q96K17 158 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 WFDC1Q9HC57 220 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 TMEM167BQ9NRX6 74 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 TRAV30A0A087WSZ9 112 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 NDUFS6O75380 124 aaKnown RBP6.83□□□□□ -1.32
USP54-203ENST00000418501 TMEM11P17152 192 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 FAM74A3Q4VXF1 159 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 TMEM144Q7Z5S9 345 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 BPIFCQ8NFQ6 507 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 NIPSNAP3BQ9BS92 247 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 ZFP92A6NM28 416 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 NCBP2LA6PVI3 153 aaKnown RBP6.83□□□□□ -1.32
USP54-203ENST00000418501 B4DSR2 109 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 CA2P00918 260 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 FBP1P09467 338 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 BTF3P20290 206 aaKnown RBP6.83□□□□□ -1.32
USP54-203ENST00000418501 NPBWR1P48145 328 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 SCGB2A2Q13296 93 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 PRSS8Q16651 343 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 SPINK9Q5DT21 86 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 VMO1Q7Z5L0 202 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 PPP1R27Q86WC6 154 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 ODF3L1Q8IXM7 274 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 VKORC1L1Q8N0U8 176 aa6.83□□□□□ -1.32
USP54-203ENST00000418501 TECRQ9NZ01 308 aaKnown RBP6.83□□□□□ -1.32
USP54-203ENST00000418501 F6UZH7 168 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 RRHO14718 337 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 MMP23AO75900 390 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 CXorf1O96002 111 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 HSPB1P04792 205 aaKnown RBP6.82□□□□□ -1.32
USP54-203ENST00000418501 VDAC2P45880 294 aaPredicted RBP6.82□□□□□ -1.32
USP54-203ENST00000418501 LCN2P80188 198 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 HOXA4Q00056 320 aaPredicted RBP6.82□□□□□ -1.32
USP54-203ENST00000418501 CLDND2Q8NHS1 167 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 ZDHHC16Q969W1 377 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 NPCDR1Q9BY65 106 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms