RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CTRB1P17538 263 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 HLA-GP17693 338 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 RPL8P62917 257 aaKnown RBP8.68□□□□□ -1.02
USP4-204ENST00000416417 TIMM50Q3ZCQ8 353 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 CTRB2Q6GPI1 263 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 OR4A47Q6IF82 309 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 BTNL8Q6UX41 500 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 ZNF66Q6ZN08 573 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 OR13F1Q8NGS4 319 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 VSTM2AQ8TAG5 236 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 EEF1AKMT3Q96AZ1 226 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 SLC5A7Q9GZV3 580 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 IGHV3-21A0A0B4J1V1 117 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 LGALS9O00182 355 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 HRASP01112 189 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 CLEC3BP05452 202 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 DEFA4P12838 97 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 ZNF57Q68EA5 555 aaPredicted RBP8.67□□□□□ -1.02
USP4-204ENST00000416417 TPRA1Q86W33 373 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 TMEM17Q86X19 198 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 GPHB5Q86YW7 130 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 LAX1Q8IWV1 398 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 OR10W1Q8NGF6 305 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 OR51H1Q8NH63 302 aa8.67□□□□□ -1.02
USP4-204ENST00000416417 TECRQ9NZ01 308 aaKnown RBP8.67□□□□□ -1.02
USP4-204ENST00000416417 PLECQ15149 4684 aaKnown RBP8.66□□□□□ -1.02
USP4-204ENST00000416417 IGLV11-55A0A075B6I3 123 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 S1PR2O95136 353 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 PPYP01298 95 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 GPR183P32249 361 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 MAS1LP35410 378 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 TGFBR1P36897 503 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 OR2B8PP59922 312 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 FAM106AQ4KMX7 169 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 ZNF818PQ6ZRF7 136 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 HOGA1Q86XE5 327 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 OR52B4Q8NGK2 314 aa8.66□□□□□ -1.02
USP4-204ENST00000416417 IGHV3OR16-8A0A075B7F1 116 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 IGLC7A0M8Q6 106 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 UPK2O00526 184 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 SCGNO76038 276 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 ATP6V1G2O95670 118 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 ZNF585BQ52M93 769 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 FAM209BQ5JX69 171 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 SLC16A13Q7RTY0 426 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 AUNIPQ9H7T9 357 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 BET1LQ9NYM9 111 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 UBQLN2Q9UHD9 624 aa8.65□□□□□ -1.02
USP4-204ENST00000416417 MRPS14O60783 128 aaKnown RBP8.64□□□□□ -1.03
USP4-204ENST00000416417 JTBO76095 146 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 DHFRP00374 187 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 HIST1H1BP16401 226 aaKnown RBP8.64□□□□□ -1.03
USP4-204ENST00000416417 NEDD8Q15843 81 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 AADACL3Q5VUY0 350 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 DMBX1Q8NFW5 382 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 ZNF502Q8TBZ5 544 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 FCGR1BQ92637 280 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 OVOL2Q9BRP0 275 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 TMEM140Q9NV12 185 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 NSG2Q9Y328 171 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 TRBV7-1A0A0A6YYK4 115 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 OR2T8A6NH00 312 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 A8MWP6 167 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 ZNF207O43670 478 aaKnown RBP8.64□□□□□ -1.03
USP4-204ENST00000416417 EWSR1Q01844 656 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP4-204ENST00000416417 PMS2P11Q13670 270 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 OR4A5Q8NH83 315 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 GGTLC1Q9BX51 225 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 HINT2Q9BX68 163 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 ETV7Q9Y603 341 aa8.64□□□□□ -1.03
USP4-204ENST00000416417 LOC102724200A0A096LPH7 203 aaPredicted RBP8.63□□□□□ -1.03
USP4-204ENST00000416417 TEX50A0A1B0GTY4 177 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 HPRT1P00492 218 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 PMP2P02689 132 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 RLN1P04808 185 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 OR13C7P0DN81 318 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 NQO2P16083 231 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 RFX2P48378 723 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 MFAP2P55001 183 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 TAS2R31P59538 309 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 WT1-ASQ06250 92 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 CATR1Q13166 79 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 KLK9Q2XQG4 91 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 SLC25A24Q6NUK1 477 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 PLET1Q6UQ28 207 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 OR5AP2Q8NGF4 316 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 CXorf58Q96LI9 332 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 COMMD5Q9GZQ3 224 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 DIABLOQ9NR28 239 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 EHFQ9NZC4 300 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 KLK9Q9UKQ9 250 aa8.63□□□□□ -1.03
USP4-204ENST00000416417 ALMS1Q8TCU4 4167 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 RBFOX2O43251 390 aaKnown RBP eCLIP8.62□□□□□ -1.03
USP4-204ENST00000416417 GNRHRP30968 328 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 HERV-K104P61576 105 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 MSMO1Q15800 293 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 RBPMS2Q6ZRY4 209 aaKnown RBP8.62□□□□□ -1.03
USP4-204ENST00000416417 ZBTB34Q8NCN2 500 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 OR1L6Q8NGR2 347 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 IL17DQ8TAD2 202 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms