RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 PEF1Q9UBV8 284 aaKnown RBP11.38□□□□□ -0.59
LIMS4-201ENST00000413601 ZNF257Q9Y2Q1 563 aa11.38□□□□□ -0.59
LIMS4-201ENST00000413601 CGB1A6NKQ9 187 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 FAM223BA6NKX1 122 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 NOL3O60936 208 aaKnown RBP11.37□□□□□ -0.59
LIMS4-201ENST00000413601 OR2J3O76001 311 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 IFNA6P05013 189 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 AREGP15514 252 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 ZP3P21754 424 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 UCP3P55916 312 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 OR2B8PP59922 312 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 ATP5G2Q06055 141 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 ZNF585BQ52M93 769 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 RNASE10Q5GAN6 216 aaKnown RBP11.37□□□□□ -0.59
LIMS4-201ENST00000413601 FAM223AQ8IWN6 122 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 ISOC1Q96CN7 298 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 COMMD9Q9P000 198 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 SORL1Q92673 2214 aa11.37□□□□□ -0.59
LIMS4-201ENST00000413601 MARCH11A6NNE9 402 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 NPIPB5A8MRT5 1133 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 GABARAPH6UMI1 98 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 KRASP01116 189 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 REG1AP05451 166 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 PSMB6P28072 239 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 S100GP29377 79 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 G6PCP35575 357 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 ERVK-16P61578 105 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 EXOSC2Q13868 293 aaKnown RBP11.36□□□□□ -0.59
LIMS4-201ENST00000413601 TBC1D26Q86UD7 250 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 SLC38A6Q8IZM9 456 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 NECAP1Q8NC96 275 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 OR4D10Q8NGI6 311 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 DIRAS2Q96HU8 199 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 COMMD5Q9GZQ3 224 aa11.36□□□□□ -0.59
LIMS4-201ENST00000413601 ZNF256Q9Y2P7 627 aaPredicted RBP11.36□□□□□ -0.59
LIMS4-201ENST00000413601 CRYGCP07315 174 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 SYNJ2BPP57105 145 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 KLF5Q13887 457 aaPredicted RBP11.35□□□□□ -0.59
LIMS4-201ENST00000413601 C15orf32Q32M92 178 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 LHFPL1Q86WI0 220 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 TMEM229BQ8NBD8 167 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 OR4C12Q96R67 309 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 C6orf62Q9GZU0 229 aaPredicted RBP11.35□□□□□ -0.59
LIMS4-201ENST00000413601 FBXL7Q9UJT9 491 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 CEPT1Q9Y6K0 416 aa11.35□□□□□ -0.59
LIMS4-201ENST00000413601 LY86O95711 162 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 RAB3DO95716 219 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 PGAM2P15259 253 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 CTRB1P17538 263 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 PI3P19957 117 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 TBPP20226 339 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 TAS2R19P59542 299 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 IL18Q14116 193 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 RPEL1Q2QD12 228 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 CTRB2Q6GPI1 263 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 ARRDC1Q8N5I2 433 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 OR10W1Q8NGF6 305 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 FANCD2OSQ96PS1 177 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 ELOVL1Q9BW60 279 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 SLIRPQ9GZT3 109 aaKnown RBP11.34□□□□□ -0.59
LIMS4-201ENST00000413601 NSG2Q9Y328 171 aa11.34□□□□□ -0.59
LIMS4-201ENST00000413601 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.33□□□□□ -0.6
LIMS4-201ENST00000413601 TEX50A0A1B0GTY4 177 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 IGLC7A0M8Q6 106 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 BMPR1BO00238 502 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 NDUFB8O95169 186 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 DHFRP00374 187 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 CD74P04233 296 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 FGF2P09038 288 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 DEFA4P12838 97 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 SPNP16150 400 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 PPP5CP53041 499 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 MRPS10P82664 201 aaKnown RBP11.33□□□□□ -0.6
LIMS4-201ENST00000413601 STEAP1BQ6NZ63 245 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 HAPLN4Q86UW8 402 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 SMIM4Q8WVI0 70 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 QTRT1Q9BXR0 403 aaKnown RBP11.33□□□□□ -0.6
LIMS4-201ENST00000413601 LSM4Q9Y4Z0 139 aaKnown RBP11.33□□□□□ -0.6
LIMS4-201ENST00000413601 S4R3C0 116 aa11.33□□□□□ -0.6
LIMS4-201ENST00000413601 CCDC160A6NGH7 325 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 PPP5D1E7EU14 171 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 SNAPC5O75971 98 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 IGKV1-39P01597 117 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 IGHV3-23P01764 117 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 IGKV1D-39P04432 117 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 TRAPPC2P0DI81 140 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 TRAPPC2BP0DI82 140 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 SSBP1Q04837 148 aaKnown RBP11.32□□□□□ -0.6
LIMS4-201ENST00000413601 DCTN2Q13561 401 aaKnown RBP11.32□□□□□ -0.6
LIMS4-201ENST00000413601 SCGB2B2Q4G0G5 96 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 FAAP20Q6NZ36 180 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 OR9G4Q8NGQ1 327 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 OR6Q1Q8NGQ2 317 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 TERB2Q8NHR7 220 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 MCFD2Q8NI22 146 aa11.32□□□□□ -0.6
LIMS4-201ENST00000413601 ZNF486Q96H40 463 aaPredicted RBP11.32□□□□□ -0.6
LIMS4-201ENST00000413601 FAM212BQ9NTI7 297 aaPredicted RBP11.32□□□□□ -0.6
LIMS4-201ENST00000413601 IGLV11-55A0A075B6I3 123 aa11.31□□□□□ -0.6
LIMS4-201ENST00000413601 CTDSPLO15194 276 aa11.31□□□□□ -0.6
LIMS4-201ENST00000413601 HIST1H1BP16401 226 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms