RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 C10orf35Q96D05 121 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 METTL26Q96S19 204 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 CACNG5Q9UF02 275 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 COL4A6Q14031 1691 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 CTXND1A0A1B0GTU2 59 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 IGKV3-11P04433 115 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 FCGR2BP31994 310 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 CMC4P56277 68 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 SPANXDQ9BXN6 97 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 AHCTF1Q8WYP5 2266 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 IGKV3D-11A0A0A0MRZ8 115 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 C3orf85A0A1B0GTC6 90 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 ZIC3O60481 467 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 BCL2P10415 239 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 CDKN2AP42771 156 aaKnown RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 H1FOOQ8IZA3 346 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 FOXC2Q99958 501 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 ZNF107Q9UII5 783 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 ESPL1Q14674 2120 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 SIPA1L1O43166 1804 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 ANKRD20A5PA0PJZ0 165 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 C7orf71A4D174 169 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 LDLRAD4O15165 306 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 SMIM10L1P0DMW3 83 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 PSG5Q15238 335 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 LINC00596Q86U02 117 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 LDLRAD3Q86YD5 345 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 ITLN2Q8WWU7 325 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 HIST1H2BAQ96A08 127 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 SMIM10Q96HG1 83 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 AICDAQ9GZX7 198 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 KBTBD11-OT1A0A1B0GTJ5 212 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 PRSS23O95084 383 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 HSPB1P04792 205 aaKnown RBP6.19□□□□□ -1.42
SCN9A-202ENST00000409435 PPP1CCP36873 323 aaKnown RBP6.19□□□□□ -1.42
SCN9A-202ENST00000409435 KISS1Q15726 138 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 MEIG1Q5JSS6 88 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 ZNF826PQ6ZT77 177 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 RGP1Q92546 391 aaPredicted RBP6.19□□□□□ -1.42
SCN9A-202ENST00000409435 TXNDC17Q9BRA2 123 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 FNDC4Q9H6D8 234 aaPredicted RBP6.19□□□□□ -1.42
SCN9A-202ENST00000409435 RALGAPA2Q2PPJ7 1873 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 TRAV39A0A0B4J263 110 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 MPV17P39210 176 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 GBGT1Q8N5D6 347 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 ATOH7Q8N100 152 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 ADAD2Q8NCV1 583 aaKnown RBP6.19□□□□□ -1.42
SCN9A-202ENST00000409435 NPIPB6E9PJ23 425 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 IGKV1D-16P01601 117 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 APELAP0DMC3 54 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 FGF9P31371 208 aaPredicted RBP6.19□□□□□ -1.42
SCN9A-202ENST00000409435 GTSF1LQ9H1H1 148 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 WDR13Q9H1Z4 485 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 RLFQ13129 1914 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 PTPRFP10586 1907 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 H0Y980 276 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 LYZP61626 148 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 SNRPD3P62318 126 aaKnown RBP6.19□□□□□ -1.42
SCN9A-202ENST00000409435 SP6Q3SY56 376 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 TM4SF20Q53R12 229 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 ZAR1Q86SH2 424 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 OR8B12Q8NGG6 310 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 ABHD14AQ9BUJ0 271 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 CCL27Q9Y4X3 112 aa6.19□□□□□ -1.42
SCN9A-202ENST00000409435 LY6G6EA0A0G2JKS1 128 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 A0A1W2PPE3 182 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 PPP1R17O96001 155 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 GAGE13Q4V321 117 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 DNM1P46Q6ZS02 220 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 CYB561D1Q8N8Q1 229 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 GTF3AQ92664 365 aaKnown RBP6.18□□□□□ -1.42
SCN9A-202ENST00000409435 C14orf144Q96I85 54 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 U3KQA8 63 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 FOCADQ5VW36 1801 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 BRWD1Q9NSI6 2320 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 ISG15P05161 165 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 GPR183P32249 361 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 P2RY4P51582 365 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 HIST1H1AQ02539 215 aaPredicted RBP6.18□□□□□ -1.42
SCN9A-202ENST00000409435 OR4P4Q8NGL7 312 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 SLX1AQ9BQ83 275 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 WNT5BQ9H1J7 359 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 GEMIN7Q9H840 131 aaKnown RBP6.18□□□□□ -1.42
SCN9A-202ENST00000409435 C20orf141Q9NUB4 165 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 NMBP08949 121 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 RCC1P18754 421 aaPredicted RBP6.18□□□□□ -1.42
SCN9A-202ENST00000409435 CKS2P33552 79 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 CEACAM21Q3KPI0 293 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 TPTE2P1Q5T6R2 138 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 DERL3Q96Q80 235 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 TLNRD1Q9H1K6 362 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 TMEM189A5PLL7 270 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 IFI6P09912 130 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 SPINK8P0C7L1 97 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 LINC00869P0C866 280 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 IL11P20809 199 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 TMEM30BQ3MIR4 351 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 SPANXN1Q5VSR9 72 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 TEX37Q96LM6 180 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 INTS1Q8N201 2190 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 732.2 ms