RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TMEM167AQ8TBQ9 72 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 ENKURQ8TC29 256 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 RHOVQ96L33 236 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 C16orf95Q9H693 158 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 BET1LQ9NYM9 111 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 A0A0B4J2A0 478 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 PIGBOS1A0A0B4J2F0 54 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 DUXBA0A1W2PPF3 345 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 C9orf170A2RU37 121 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 MARCH11A6NNE9 402 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 KBTBD11O94819 623 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 DUS4LO95620 317 aaKnown RBP7.24□□□□□ -1.25
VPS53-203ENST00000401468 IGKV1-5P01602 117 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 IGHG2P01859 326 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 SAA1P0DJI8 122 aaPredicted RBP7.24□□□□□ -1.25
VPS53-203ENST00000401468 AKR1C4P17516 323 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 LPAR6P43657 344 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 RPS16P62249 146 aaKnown RBP7.24□□□□□ -1.25
VPS53-203ENST00000401468 SRPXP78539 464 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 OXA1LQ15070 435 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 ANKRD55Q3KP44 614 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 OR2B11Q5JQS5 317 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 OR4A47Q6IF82 309 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 TMED4Q7Z7H5 227 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 LYG2Q86SG7 212 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 PPP1R27Q86WC6 154 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 SELENOHQ8IZQ5 122 aaKnown RBP7.24□□□□□ -1.25
VPS53-203ENST00000401468 OR4A5Q8NH83 315 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 VSTM2AQ8TAG5 236 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 R3HDM4Q96D70 268 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 KRTAP4-7Q9BYR0 210 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 NPFFR1Q9GZQ6 430 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 ZNF702PQ9H963 129 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 SHPKQ9UHJ6 478 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 KCNIP3Q9Y2W7 256 aa7.24□□□□□ -1.25
VPS53-203ENST00000401468 TRAV6A0A075B6T7 132 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 IGHV7-81A0A0B4J1V7 117 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 A0A1B0GUS0 222 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 SLC25A17O43808 307 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 PRAF2O60831 178 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 OR2A4O95047 310 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 HLA-AP01891 365 aaKnown RBP7.23□□□□□ -1.25
VPS53-203ENST00000401468 IGF1P05019 195 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 SERPINE2P07093 398 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 ANXA3P12429 323 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 SPNP16150 400 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 ANXA7P20073 488 aaKnown RBP7.23□□□□□ -1.25
VPS53-203ENST00000401468 MAS1LP35410 378 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 BLCAPP62952 87 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 HNF4GQ14541 408 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 PRSS8Q16651 343 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 RGS21Q2M5E4 152 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 SP6Q3SY56 376 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 VMA21Q3ZAQ7 101 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 C19orf54Q5BKX5 351 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 NMSQ5H8A3 153 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 PLET1Q6UQ28 207 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 C10orf99Q6UWK7 81 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 ZNF562Q6V9R5 426 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 FAM219AQ8IW50 185 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 VKORC1L1Q8N0U8 176 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 WIPF2Q8TF74 440 aaPredicted RBP7.23□□□□□ -1.25
VPS53-203ENST00000401468 CHPT1Q8WUD6 406 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 MITD1Q8WV92 249 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 RBPMSQ93062 196 aaKnown RBP7.23□□□□□ -1.25
VPS53-203ENST00000401468 LSM10Q969L4 123 aaKnown RBP7.23□□□□□ -1.25
VPS53-203ENST00000401468 OR2A7Q96R45 310 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 HSPB9Q9BQS6 159 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 FBXL15Q9H469 300 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 ZNF430Q9H8G1 570 aaPredicted RBP7.23□□□□□ -1.25
VPS53-203ENST00000401468 TMEM140Q9NV12 185 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 KIAA1456Q9P272 454 aa7.23□□□□□ -1.25
VPS53-203ENST00000401468 METTL1Q9UBP6 276 aaKnown RBP7.23□□□□□ -1.25
VPS53-203ENST00000401468 COL7A1Q02388 2944 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 A0A0B4J293 547 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 C7orf66A4D0T2 115 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 SNRPGP15A8MWD9 76 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 INMT-MINDY4F8WBC2 141 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 UPK2O00526 184 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 FCN1O00602 326 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 CREBL2O60519 120 aaPredicted RBP7.22□□□□□ -1.25
VPS53-203ENST00000401468 ATG12O94817 140 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 SLC25A6P12236 298 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 VDAC1P21796 283 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 NDPQ00604 133 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 PJVKQ0ZLH3 352 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 LIN54Q6MZP7 749 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 ZNF429Q86V71 674 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 FOXRED2Q8IWF2 684 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 LGI3Q8N145 548 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 OR2T6Q8NHC8 308 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 ZNF431Q8TF32 576 aaPredicted RBP7.22□□□□□ -1.25
VPS53-203ENST00000401468 RASL11BQ9BPW5 248 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 PRSS22Q9GZN4 317 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 SERTAD4Q9NUC0 356 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 TMEM14BQ9NUH8 114 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 COA4Q9NYJ1 87 aa7.22□□□□□ -1.25
VPS53-203ENST00000401468 A0A0G2JRQ6 117 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 C15orf61A6NNL5 157 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 NCBP2LA6PVI3 153 aaKnown RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms