RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SCGB2B2Q4G0G5 96 aa21.87■■□□□ 1.09
HMGB1-205ENST00000399494 OR4D10Q8NGI6 311 aa21.87■■□□□ 1.09
HMGB1-205ENST00000399494 DGCR14Q96DF8 476 aaKnown RBP21.87■■□□□ 1.09
HMGB1-205ENST00000399494 GAR1Q9NY12 217 aaKnown RBP21.87■■□□□ 1.09
HMGB1-205ENST00000399494 GSTZ1O43708 216 aaPredicted RBP21.86■■□□□ 1.09
HMGB1-205ENST00000399494 IGHV3-11P01762 117 aa21.86■■□□□ 1.09
HMGB1-205ENST00000399494 PPP5CP53041 499 aa21.86■■□□□ 1.09
HMGB1-205ENST00000399494 TAS2R31P59538 309 aa21.86■■□□□ 1.09
HMGB1-205ENST00000399494 MRGPRG-AS1Q2M3A8 158 aa21.86■■□□□ 1.09
HMGB1-205ENST00000399494 PUSL1Q8N0Z8 303 aaKnown RBP21.86■■□□□ 1.09
HMGB1-205ENST00000399494 SRSF12Q8WXF0 261 aaKnown RBP21.86■■□□□ 1.09
HMGB1-205ENST00000399494 CITED4Q96RK1 184 aa21.86■■□□□ 1.09
HMGB1-205ENST00000399494 ZNF355PQ9NSJ1 428 aa21.86■■□□□ 1.09
HMGB1-205ENST00000399494 MPPED1O15442 326 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 AKAIN1P0CW23 69 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 NQO2P16083 231 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 F2RP25116 425 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 Q8N1Y9 231 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 DMBX1Q8NFW5 382 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 TMEM68Q96MH6 324 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 MS4A10Q96PG2 267 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 OR4C12Q96R67 309 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 SOSTQ9BQB4 213 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 TM2D3Q9BRN9 247 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 PLEKHA2Q9HB19 425 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 HRASLSQ9HDD0 168 aa21.85■■□□□ 1.09
HMGB1-205ENST00000399494 DPPA5A6NC42 116 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 MSGN1A6NI15 193 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 DISC1C4P0D8 188 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 S1PR2O95136 353 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 APELAP0DMC3 54 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 ERVK-16P61578 105 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 PYDC2Q56P42 97 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 OR4A47Q6IF82 309 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 TBC1D26Q86UD7 250 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 LHFPL1Q86WI0 220 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 TMEM167AQ8TBQ9 72 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 COMMD9Q9P000 198 aa21.84■■□□□ 1.09
HMGB1-205ENST00000399494 FAAP20Q6NZ36 180 aa21.83■■□□□ 1.09
HMGB1-205ENST00000399494 OR5T1Q8NG75 326 aa21.83■■□□□ 1.09
HMGB1-205ENST00000399494 TERB2Q8NHR7 220 aa21.83■■□□□ 1.09
HMGB1-205ENST00000399494 PALMDQ9NP74 551 aa21.83■■□□□ 1.09
HMGB1-205ENST00000399494 SLC2A9Q9NRM0 540 aa21.83■■□□□ 1.09
HMGB1-205ENST00000399494 LCE6AA0A183 80 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 MAS1LP35410 378 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 LPAR6P43657 344 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 TPPP2P59282 170 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 OR4C16Q8NGL9 310 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 OR4A5Q8NH83 315 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 ZNF486Q96H40 463 aaPredicted RBP21.82■■□□□ 1.08
HMGB1-205ENST00000399494 SPIN2AQ99865 258 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 SPIN2BQ9BPZ2 258 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 SLA2Q9H6Q3 261 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 BET1LQ9NYM9 111 aa21.82■■□□□ 1.08
HMGB1-205ENST00000399494 LYSTQ99698 3801 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 TRGV3P03979 118 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 IGHV4-30-4P0DP06 118 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 RPL8P62917 257 aaKnown RBP21.81■■□□□ 1.08
HMGB1-205ENST00000399494 SPANXN2Q5MJ10 180 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 C10orf55Q5SWW7 151 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 ZFAND1Q8TCF1 268 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 THAP7Q9BT49 309 aaPredicted RBP21.81■■□□□ 1.08
HMGB1-205ENST00000399494 ELOVL1Q9BW60 279 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 C19orf73Q9NVV2 129 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 COA4Q9NYJ1 87 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 V9GYH0 126 aa21.81■■□□□ 1.08
HMGB1-205ENST00000399494 CSMD3Q7Z407 3707 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 ANKRD20A5PA0PJZ0 165 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 IGLV1-51P01701 117 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 RPA2P15927 270 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 PI3P19957 117 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 POU2AF1Q16633 256 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 HAPLN4Q86UW8 402 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 TMEM140Q9NV12 185 aa21.8■■□□□ 1.08
HMGB1-205ENST00000399494 MARCH11A6NNE9 402 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 A8MZ25 164 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 H3BUA1 57 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 ZNF735P0CB33 412 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 RPL27AP46776 148 aaKnown RBP21.79■■□□□ 1.08
HMGB1-205ENST00000399494 PIGPP57054 158 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 CCDC190Q86UF4 302 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 Q8N402 240 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 MARCH1Q8TCQ1 289 aa21.79■■□□□ 1.08
HMGB1-205ENST00000399494 FYTTD1Q96QD9 318 aaKnown RBP21.79■■□□□ 1.08
HMGB1-205ENST00000399494 PTBP1P26599 531 aaKnown RBP eCLIP21.78■■□□□ 1.08
HMGB1-205ENST00000399494 ZFAND6Q6FIF0 208 aa21.78■■□□□ 1.08
HMGB1-205ENST00000399494 CCDC71LQ8N9Z2 235 aa21.78■■□□□ 1.08
HMGB1-205ENST00000399494 OR13C8Q8NGS7 320 aa21.78■■□□□ 1.08
HMGB1-205ENST00000399494 PRRT1Q99946 306 aa21.78■■□□□ 1.08
HMGB1-205ENST00000399494 EDA2RQ9HAV5 297 aa21.78■■□□□ 1.08
HMGB1-205ENST00000399494 FAM212BQ9NTI7 297 aaPredicted RBP21.78■■□□□ 1.08
HMGB1-205ENST00000399494 COPZ2Q9P299 210 aa21.78■■□□□ 1.08
HMGB1-205ENST00000399494 KRASP01116 189 aa21.77■■□□□ 1.08
HMGB1-205ENST00000399494 OR9G9P0C7N8 305 aa21.77■■□□□ 1.08
HMGB1-205ENST00000399494 HLA-GP17693 338 aa21.77■■□□□ 1.08
HMGB1-205ENST00000399494 RND3P61587 244 aa21.77■■□□□ 1.08
HMGB1-205ENST00000399494 ZNF585BQ52M93 769 aa21.77■■□□□ 1.08
HMGB1-205ENST00000399494 MCUBQ9NWR8 336 aa21.77■■□□□ 1.08
HMGB1-205ENST00000399494 C14orf166Q9Y224 244 aaKnown RBP21.77■■□□□ 1.08
HMGB1-205ENST00000399494 UPK2O00526 184 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms