RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MALSU1Q96EH3 234 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 C18orf15Q96N68 181 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 TIMM17AQ99595 171 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 NDFIP1Q9BT67 221 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 LINC00597Q9H2U6 94 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 PARP11Q9NR21 331 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 RPS6KB2Q9UBS0 482 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 LINC00527Q9UJ94 153 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 RFNGQ9Y644 331 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 LRRC37A3O60309 1634 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 CRB1P82279 1406 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 THSD7BQ9C0I4 1608 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 IGKV6D-21A0A0A0MT36 114 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 IGKV3D-20A0A0C4DH25 116 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM218A2RU14 115 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TRAF3IP2O43734 574 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-204ENST00000399489 ANGPTL7O43827 346 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 COX7A2P2O60397 106 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 SS18L1O75177 396 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-204ENST00000399489 HLA-DPB1P04440 258 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 LGALS1P09382 135 aaKnown RBP2.96□□□□□ -1.94
HMGB1-204ENST00000399489 CPMP14384 443 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 CCL1P22362 96 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 RPS3P23396 243 aaKnown RBP eCLIP2.96□□□□□ -1.949e-18■■□□□ 12.1
HMGB1-204ENST00000399489 G6PCP35575 357 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 RHEBQ15382 184 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 LINC00303Q3SY05 128 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 CGB2Q6NT52 195 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 SBSNQ6UWP8 590 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 OR5W2Q8NH69 310 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 CT55Q8WUE5 264 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TWIST2Q8WVJ9 160 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 PLEKHB2Q96CS7 222 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 SLC25A44Q96H78 314 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM101Q96IK0 257 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 LITAFQ99732 161 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 ANAPC13Q9BS18 74 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 PSMG3Q9BT73 122 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-204ENST00000399489 LRRC61Q9BV99 259 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF436Q9C0F3 470 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-204ENST00000399489 CHST6Q9GZX3 395 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM222Q9H0R3 208 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 CDC42EP4Q9H3Q1 356 aaKnown RBP2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TAF9BQ9HBM6 251 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF581Q9P0T4 197 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 NAT8BQ9UHF3 227 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 SCP2D1Q9UJQ7 156 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TBX21Q9UL17 535 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TNFSF18Q9UNG2 199 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 WASHC3Q9Y3C0 194 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 COL24A1Q17RW2 1714 aa2.96□□□□□ -1.94
HMGB1-204ENST00000399489 TULP4Q9NRJ4 1543 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 VIRMAQ69YN4 1812 aaKnown RBP2.95□□□□□ -1.94
HMGB1-204ENST00000399489 C2orf16Q68DN1 1984 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 VWA8A3KMH1 1905 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 TRAV26-2A0A0B4J265 109 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 SIGLEC16A6NMB1 481 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 FABP5P3A8MUU1 101 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 LEUTXA8MZ59 168 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF354AO60765 605 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-204ENST00000399489 SERF1AO75920 110 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 NRASP01111 189 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 AMBPP02760 352 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 OPN1SWP03999 348 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 PSG2P11465 335 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 CNTFRP26992 372 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 SRIP30626 198 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 GABRA2P47869 451 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 POLR2HP52434 150 aaKnown RBP2.95□□□□□ -1.94
HMGB1-204ENST00000399489 IL15RAQ13261 267 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 PABPC1L2AQ5JQF8 200 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 ACP7Q6ZNF0 438 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 LINC00596Q86U02 117 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 SNX29P2Q8IUI4 249 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 OR8I2Q8N0Y5 310 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM86AQ8N2M4 240 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 C9orf62Q8N4C0 152 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF645Q8N7E2 425 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 TCTEX1D1Q8N7M0 179 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 YIPF7Q8N8F6 280 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 OR8B12Q8NGG6 310 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 OR8S1Q8NH09 359 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 OR51H1Q8NH63 302 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 HIST1H2BAQ96A08 127 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 GPR146Q96CH1 333 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 IP6K3Q96PC2 410 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 HSD17B10Q99714 261 aaKnown RBP2.95□□□□□ -1.94
HMGB1-204ENST00000399489 OR52D1Q9H346 318 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF696Q9H7X3 374 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 NOX3Q9HBY0 568 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 RGPD8O14715 1765 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-204ENST00000399489 PPLO60437 1756 aa2.95□□□□□ -1.94
HMGB1-204ENST00000399489 COL2A1P02458 1487 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-204ENST00000399489 IFT172Q9UG01 1749 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 SBF2Q86WG5 1849 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 TRAV19A0A0A6YYK7 116 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 DUXBA0A1W2PPF3 345 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 LINC00862A6NCI5 91 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 RIIAD1A6NNX1 92 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms