RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CALYQ9NYX4 217 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 TOGARAM1Q9Y4F4 1720 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 SPEM1Q8N4L4 309 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 PGPEP1Q9NXJ5 209 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 PPIAL4EA0A075B759 164 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 PSMB11A5LHX3 300 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 PPIAL4FP0DN26 164 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 PPIAL4AQ9Y536 164 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 COL16A1Q07092 1604 aaPredicted RBP10.1□□□□□ -0.79
SYNPO-202ENST00000394243 ALPK2Q86TB3 2170 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 IGHV3OR16-12A0A075B7B8 117 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 A0A0J9YW62 118 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 LOC101059948A0A1B0GTJ6 334 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 LEPP41159 167 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF146Q15072 292 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 PCSK4Q6UW60 755 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 TRAV24A0A0B4J272 114 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 UCP2P55851 309 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 LINC01590Q5TEZ4 76 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 CCDC144NLQ6NUI1 221 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 TMEM92Q6UXU6 159 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 CT55Q8WUE5 264 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 NXPH1P58417 271 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 RRN3P1Q2M238 152 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 CITED1Q99966 193 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 LHX9Q9NQ69 397 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 KLK10O43240 276 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 ORMDL3Q8N138 153 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 RPP25Q9BUL9 199 aaKnown RBP10.09□□□□□ -0.79
SYNPO-202ENST00000394243 NBEAP1P0C6P0 100 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 PSMG4Q5JS54 123 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 DOCK5Q9H7D0 1870 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 ITGB4P16144 1822 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 A8MWV9 139 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 FOXS1O43638 330 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 IGFBP2P18065 325 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 SEC11AP67812 179 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 RNASEH2CQ8TDP1 164 aaKnown RBP10.09□□□□□ -0.79
SYNPO-202ENST00000394243 ODAMA1E959 279 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 CXCL10P02778 98 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 CCL8P80075 99 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 C1orf194Q5T5A4 169 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 C2orf88Q9BSF0 95 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 A0A1W2PS18 150 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 TSPOP30536 169 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF479Q96JC4 524 aa10.09□□□□□ -0.79
SYNPO-202ENST00000394243 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.08□□□□□ -0.8
SYNPO-202ENST00000394243 M0R381 172 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 ESDP10768 282 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 PAX2Q02962 417 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 DDB2Q92466 427 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 SCN4AP35499 1836 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 OR10W1Q8NGF6 305 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 PRDM14Q9GZV8 571 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 F8VVB4 439 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 F8VWA3 439 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 NPFFR1Q9GZQ6 430 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 IDI2-AS1Q9NZ38 188 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 DOCK2Q92608 1830 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 IGKV1-8A0A0C4DH67 115 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 WNT9BO14905 357 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 FGF16O43320 207 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 SYNGR3O43761 229 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 PYY3Q5JQD4 70 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 OR10J3Q5JRS4 329 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 C19orf48Q6RUI8 117 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 C1QL4Q86Z23 238 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 TCFL5Q9UL49 500 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 TRAV30A0A087WSZ9 112 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 FOXL2P58012 376 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 UBE2V1Q13404 147 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 MCM3APO60318 1980 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 COQ2Q96H96 371 aa10.08□□□□□ -0.8
SYNPO-202ENST00000394243 TRBV7-9A0A0J9YWB2 115 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 NPFFO15130 113 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 C1QL2Q7Z5L3 287 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 VKORC1Q9BQB6 163 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 ST20Q9HBF5 79 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 FTH1P19P0C7X4 201 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 NPIPB4C9JG80 1138 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 CDX4O14627 284 aaPredicted RBP10.07□□□□□ -0.8
SYNPO-202ENST00000394243 LY6G6FQ5SQ64 297 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 MIR17HGQ75NE6 70 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 SAXO1Q8IYX7 474 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 MS4A5Q9H3V2 200 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 A0A1B0GTI1 187 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 hCG_38984A0A1B0GV85 526 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 FMC1Q96HJ9 113 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 PKIBQ9C010 78 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 LPAR2Q9HBW0 351 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 HSD52Q0P140 79 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 ZNF525Q8N782 197 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 CACNA1IQ9P0X4 2223 aa10.07□□□□□ -0.8
SYNPO-202ENST00000394243 A0A0G2JLM5 398 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 PSG1P11464 419 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 CRYBA2P53672 197 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 STARD6P59095 220 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 TMEM155Q4W5P6 130 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 DPH3P1Q9H4G8 78 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 TDRD6O60522 2096 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms