RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GFRA3O60609 400 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 RAB9BQ9NP90 201 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 CLN8Q9UBY8 286 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 ELOA3CA0A087WX78 387 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-204ENST00000392003 MAP1LC3B2A6NCE7 125 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 MGST3O14880 152 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 SAP30O75446 220 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 LGALS7P47929 136 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 MMDQ15546 238 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 UNQ5815/PRO19632Q6UWF5 114 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 MBD3L1Q8WWY6 194 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 MAP1LC3BQ9GZQ8 125 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 BCL2P10415 239 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 EDDM3BP56851 147 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 ERVFRD-1P60508 538 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 ERVK-16P61578 105 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 DLK1P80370 383 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 HOXA4Q00056 320 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-204ENST00000392003 TIMM23BQ5SRD1 257 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 COL5A1-AS1Q5SY13 56 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 TMEM14EPQ6UXP3 125 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 HAPLN4Q86UW8 402 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 FAM90A1Q86YD7 464 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 SPACA3Q8IXA5 215 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 CD177Q8N6Q3 437 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 LHX4Q969G2 390 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 ZNF665Q9H7R5 613 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 DKK4Q9UBT3 224 aa8.03□□□□□ -1.12
COL6A3-204ENST00000392003 DMXL1Q9Y485 3027 aa8.02□□□□□ -1.12
COL6A3-204ENST00000392003 HPRT1P00492 218 aa8.02□□□□□ -1.12
COL6A3-204ENST00000392003 CGAP01215 116 aa8.02□□□□□ -1.12
COL6A3-204ENST00000392003 CISD1Q9NZ45 108 aaKnown RBP8.02□□□□□ -1.12
COL6A3-204ENST00000392003 TIMM9Q9Y5J7 89 aa8.02□□□□□ -1.12
COL6A3-204ENST00000392003 ANKRD11Q6UB99 2663 aaPredicted RBP8.02□□□□□ -1.13
COL6A3-204ENST00000392003 C1QTNF9BB2RNN3 333 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 SRRM5B3KS81 715 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 SPRY3O43610 288 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 CD33P20138 364 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 FAM53AQ6NSI3 398 aaPredicted RBP8.02□□□□□ -1.13
COL6A3-204ENST00000392003 MRGPRGQ86SM5 289 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 MOGAT3Q86VF5 341 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 RPRMLQ8N4K4 120 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 OR10G4Q8NGN3 311 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 SLC35E1Q96K37 410 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 OR2V2Q96R30 315 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 DCTN5Q9BTE1 182 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 HERV-K104P63124 156 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 RPUSD4Q96CM3 377 aaKnown RBP8.02□□□□□ -1.13
COL6A3-204ENST00000392003 VSIRQ9H7M9 311 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 VAX2Q9UIW0 290 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 JPT1Q9UK76 154 aa8.02□□□□□ -1.13
COL6A3-204ENST00000392003 IGHV3OR15-7A0A075B7D8 119 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 A0A087WWC5 75 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 KIR2DL5BA0A0G2JN68 375 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 KIR2DL5BA0A0G2JPC4 375 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 B4DEV8 164 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 C17orf112F2Z3M2 114 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 M0R1X1 148 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 ZG16O60844 167 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 GLRXP35754 106 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 TMEM177Q53S58 311 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 C1orf194Q5T5A4 169 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 ZGRF1Q86YA3 2104 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 KIR2DL5AQ8N109 375 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 GBGT1Q8N5D6 347 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 OR4A16Q8NH70 328 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 FAM222BQ8WU58 562 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 PLPPR2Q96GM1 343 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 CITED1Q99966 193 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 OR6C3Q9NZP0 311 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 NAGKQ9UJ70 344 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 SELENOKQ9Y6D0 94 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 IGF2RP11717 2491 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 TLN1Q9Y490 2541 aaKnown RBP8.01□□□□□ -1.13
COL6A3-204ENST00000392003 FCGR3BO75015 233 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 SCGB1D1O95968 90 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 IGHV3-13P01766 116 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 OR5G3P0C626 314 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 TNFSF4P23510 183 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 PNRC1Q12796 327 aaPredicted RBP8.01□□□□□ -1.13
COL6A3-204ENST00000392003 OR10W1Q8NGF6 305 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 P2RX4Q99571 388 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 AURKAIP1Q9NWT8 199 aaPredicted RBP8.01□□□□□ -1.13
COL6A3-204ENST00000392003 DIDO1Q9BTC0 2240 aaKnown RBP8.01□□□□□ -1.13
COL6A3-204ENST00000392003 PSG1P11464 419 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 EGR1P18146 543 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 ID1P41134 155 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 RBPJQ06330 500 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 OR13D1Q8NGV5 346 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 FAM57AQ8TBR7 257 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 C5orf30Q96GV9 206 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 FAM234AQ9H0X4 552 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 SLC35D1Q9NTN3 355 aa8.01□□□□□ -1.13
COL6A3-204ENST00000392003 PTPRQQ9UMZ3 2332 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 ZNF737O75373 536 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 PSMB3P49720 205 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 EIF4EBP1Q13541 118 aaPredicted RBP8□□□□□ -1.13
COL6A3-204ENST00000392003 FFAR4Q5NUL3 377 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 LINC01551Q86U37 167 aa8□□□□□ -1.13
COL6A3-204ENST00000392003 ITLN1Q8WWA0 313 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms