RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 BCL2L11O43521 198 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ZIC3O60481 467 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 NDUFB1O75438 58 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 CTAG2O75638 210 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE1Q13065 139 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE4Q13068 117 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE5Q13069 117 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE6Q13070 117 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 RSPO4Q2I0M5 234 aaPredicted RBP4□□□□□ -1.77
SCN1A-202ENST00000375405 CLPSL2Q6UWE3 100 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 CDCA4Q9BXL8 241 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 OTORQ9NRC9 128 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 RNF115Q9Y4L5 304 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 R4GMQ9 66 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 X6R8D5 127 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 NDUFS8O00217 210 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 BUB3O43684 328 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 HLA-DRB1P01911 266 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 UBE2AP49459 152 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 LIM2P55344 173 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 CR1LQ2VPA4 569 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ACER2Q5QJU3 275 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GDF7Q7Z4P5 450 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 PCP2Q8IVA1 136 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 MORN4Q8NDC4 146 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 C17orf47Q8NEP4 570 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 MRGPRX1Q96LB2 322 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 FANCD2OSQ96PS1 177 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 DSCAML1Q8TD84 2053 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ADGRB1O14514 1584 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 KIF13AQ9H1H9 1805 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 A8MWP6 167 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 EDIL3O43854 480 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 ACYP1P07311 99 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF32P17041 273 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 C1orf159Q96HA4 380 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 WFIKKN1Q96NZ8 548 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 BCL9O00512 1426 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 USP17L23D6RBM5 183 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 MYOD1P15172 320 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 RING1Q06587 406 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 CLDND2Q8NHS1 167 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 NEUROG1Q92886 237 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 EGLN2Q96KS0 407 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 C19orf24Q9BVV8 132 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 H0Y9J4 135 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 RPL18Q07020 188 aaKnown RBP3.99□□□□□ -1.77
SCN1A-202ENST00000375405 INO80CQ6PI98 192 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-202ENST00000375405 MRGPRFQ96AM1 343 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 SMIM19Q96E16 107 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 IL19Q9UHD0 177 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 PHRF1Q9P1Y6 1649 aaKnown RBP3.99□□□□□ -1.77
SCN1A-202ENST00000375405 A0A096LPF7 62 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 F8VVB4 439 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 F8VWA3 439 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 HSPB1P04792 205 aaKnown RBP3.99□□□□□ -1.77
SCN1A-202ENST00000375405 FOXF1Q12946 379 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 NCMAPQ5T1S8 102 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 PNKDQ8N490 385 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM229BQ8NBD8 167 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 OR51M1Q9H341 326 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 KLHDC2Q9Y2U9 406 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 ZP1P60852 638 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 CDCP2Q5VXM1 449 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF600Q6ZNG1 722 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 ARPC1AQ92747 370 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 NEURL3Q96EH8 262 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 ST20Q9HBF5 79 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 ARFGEF2Q9Y6D5 1785 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 TRAV13-1A0A0B4J241 112 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 A0A0U1RQV5 110 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 METTL12A8MUP2 240 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 TRACP01848 142 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 CFHR2P36980 270 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 GFERP55789 205 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 SPNS2Q8IVW8 549 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 LINC00615Q96LM1 132 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-202ENST00000375405 RCHY1Q96PM5 261 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 MTCH2Q9Y6C9 303 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 DENND4AQ7Z401 1863 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM8BA6NDV4 472 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 PSPNO60542 156 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 PROP1O75360 226 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 PTHLHP12272 177 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 PLK5Q496M5 336 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 FCRL6Q6DN72 434 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM91Q6ZNR0 172 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 KLHL30-AS1Q8NEE0 82 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 RARRES2Q99969 163 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 TRAF4Q9BUZ4 470 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM30AQ9NV96 361 aa3.99□□□□□ -1.77
SCN1A-202ENST00000375405 IGKV1D-42A0A075B6H8 117 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 IFITM5A6NNB3 132 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 PLPP1O14494 284 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 ZFPL1O95159 310 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 EVI2AP22794 236 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 FAM3BP58499 235 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-202ENST00000375405 EGR4Q05215 589 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 ZFAND6Q6FIF0 208 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 GTSF1Q8WW33 167 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms