RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 FAM90A26D6RGX4 464 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 CD82P27701 267 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 FOXG1P55316 489 aaPredicted RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 KIAA2026Q5HYC2 2103 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 FBLN5Q9UBX5 448 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 OR9G9P0C7N8 305 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 IGHV1-2P23083 117 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 RPL31P62899 125 aaKnown RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 GNG5P63218 68 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 SRSF4Q08170 494 aaKnown RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 GGNQ86UU5 652 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 TBL2Q9Y4P3 447 aaKnown RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 IGHV3-23P01764 117 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 LYL1P12980 280 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 Q0VFX4 171 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM177Q53S58 311 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 FAM19A2Q8N3H0 131 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 PLSCR2Q9NRY7 297 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 HSPB8Q9UJY1 196 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 HILPDAQ9Y5L2 63 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 AKAP6Q13023 2319 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 IGLV3-32A0A0A0MS00 114 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 FOXH1O75593 365 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 HIST1H1EP10412 219 aaKnown RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 ST6GALNAC3Q8NDV1 305 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 ZCCHC14Q8WYQ9 949 aaKnown RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 REPIN1Q9BWE0 567 aaKnown RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 RNASE7Q9H1E1 156 aaKnown RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 AMMECR1Q9Y4X0 333 aaPredicted RBP5.51□□□□□ -1.53
SMC1A-202ENST00000375340 S4R3C0 116 aa5.51□□□□□ -1.53
SMC1A-202ENST00000375340 RBFOX2O43251 390 aaKnown RBP eCLIP5.51□□□□□ -1.531e-7■■■■■ 26.9
SMC1A-202ENST00000375340 TRBV6-7A0A0A0MS04 114 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 CGB1A6NKQ9 187 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 ECSCRQ19T08 205 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 C5orf17Q8NAS9 161 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 WBP1Q96G27 269 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 F11RQ9Y624 299 aaKnown RBP5.5□□□□□ -1.53
SMC1A-202ENST00000375340 SLC25A17O43808 307 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 NMUP48645 174 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 RIPPLY2Q5TAB7 128 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 BMPERQ8N8U9 685 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 OR51G1Q8NGK1 321 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 HS3ST6Q96QI5 342 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 IER2Q9BTL4 223 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 DERL1Q9BUN8 251 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 MED12Q93074 2177 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 MGST3O14880 152 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 IMMP1LQ96LU5 166 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 SLC35E4Q6ICL7 350 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 MRPL14Q6P1L8 145 aaKnown RBP5.5□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM191AQ9H0A3 160 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 DOCK11Q5JSL3 2073 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 ZNF716A6NP11 495 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 HOXB1P14653 301 aaPredicted RBP5.5□□□□□ -1.53
SMC1A-202ENST00000375340 LINC00205P59089 165 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 RIGQ13278 110 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 SPATA31B1PQ5VZV4 182 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 GCSAMQ8N6F7 178 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM171Q8WVE6 324 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 SPRR3Q9UBC9 169 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 RND2P52198 227 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 BPIFA4PQ86YQ2 179 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 SPSB4Q96A44 273 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 HIST1H2BLQ99880 126 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 LINC00470Q9BZP3 86 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 TUBA4BQ9H853 241 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 MKRN2OSH3BPM6 223 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 C20orf204Q6ZNR8 217 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 OR8B3Q8NGG8 313 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 C14orf144Q96I85 54 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 OR8B2Q96RD0 313 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 NABP2Q9BQ15 211 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 WIPF3A6NGB9 483 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 IFITM10A6NMD0 228 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 SERF1AO75920 110 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 COX5BP10606 129 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 RPL8P62917 257 aaKnown RBP5.5□□□□□ -1.53
SMC1A-202ENST00000375340 OR4B1Q8NGF8 309 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 OR5R1Q8NH85 324 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 SSBP4Q9BWG4 385 aaPredicted RBP5.5□□□□□ -1.53
SMC1A-202ENST00000375340 IL36BQ9NZH7 164 aa5.5□□□□□ -1.53
SMC1A-202ENST00000375340 HYPMO75409 117 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 BTF3P20290 206 aaKnown RBP5.49□□□□□ -1.53
SMC1A-202ENST00000375340 CSRP2Q16527 193 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 KHDC1LQ5JSQ8 128 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 CACNA1EQ15878 2313 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 SAA2-SAA4A0A096LPE2 208 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 SAA2P0DJI9 122 aaPredicted RBP5.49□□□□□ -1.53
SMC1A-202ENST00000375340 HOXA4Q00056 320 aaPredicted RBP5.49□□□□□ -1.53
SMC1A-202ENST00000375340 ZNF788Q6ZQV5 615 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 LINC00305Q7Z4B0 112 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 YTHDF2Q9Y5A9 579 aaKnown RBP5.49□□□□□ -1.53
SMC1A-202ENST00000375340 IGLV3-12A0A075B6K2 115 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 MUC21A0A0G2JKD1 596 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 MUC21A0A140T8X8 626 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 ZNF146Q15072 292 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 MUC21Q5SSG8 566 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM105Q8N8V8 129 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 ZNF430Q9H8G1 570 aaPredicted RBP5.49□□□□□ -1.53
SMC1A-202ENST00000375340 UBTD1Q9HAC8 227 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms