RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 OR4B1Q8NGF8 309 aa17.5■□□□□ 0.39
UPF3A-202ENST00000375299 RNF114Q9Y508 228 aa17.5■□□□□ 0.39
UPF3A-202ENST00000375299 C9orf172C9J069 976 aa17.49■□□□□ 0.39
UPF3A-202ENST00000375299 SP1P08047 785 aa17.49■□□□□ 0.39
UPF3A-202ENST00000375299 LINC00696Q6ZRV3 163 aa17.49■□□□□ 0.39
UPF3A-202ENST00000375299 GPX1P07203 203 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 MEOX1P50221 254 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 ERVK-16P61578 105 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 RELBQ01201 579 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 VKORC1L1Q8N0U8 176 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 OR8I2Q8N0Y5 310 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 STPG3Q8N7X2 389 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 KLF14Q8TD94 323 aaPredicted RBP17.48■□□□□ 0.39
UPF3A-202ENST00000375299 DCTN5Q9BTE1 182 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 SFXN3Q9BWM7 321 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 GNB4Q9HAV0 340 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 ZNF586Q9NXT0 402 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 FOXH1O75593 365 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 TRAT1Q6PIZ9 186 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 WDR82Q6UXN9 313 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 Q8N976 141 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 FAM103A1Q9BTL3 118 aaKnown RBP17.48■□□□□ 0.39
UPF3A-202ENST00000375299 CXXC4Q9H2H0 198 aa17.48■□□□□ 0.39
UPF3A-202ENST00000375299 AREGP15514 252 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 ST6GALNAC3Q8NDV1 305 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 FAM234AQ9H0X4 552 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 TRAV3A0A0B4J244 114 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 KRTDAPP60985 99 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 OR5I1Q13606 314 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 TEPPQ6URK8 271 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 FOXJ2Q9P0K8 574 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 TCF19Q9Y242 345 aa17.47■□□□□ 0.39
UPF3A-202ENST00000375299 TRGV8A0A0C4DH27 118 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 M0R1X1 148 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 MT-ND6P03923 174 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 MRPS11P82912 194 aaKnown RBP17.46■□□□□ 0.39
UPF3A-202ENST00000375299 OR4P4Q8NGL7 312 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 RNF2Q99496 336 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 OPN3Q9H1Y3 402 aaPredicted RBP17.46■□□□□ 0.39
UPF3A-202ENST00000375299 MSL2Q9HCI7 577 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 DIRC3C9JPN6 131 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 RPL19P84098 196 aaKnown RBP17.46■□□□□ 0.39
UPF3A-202ENST00000375299 COL5A1-AS1Q5SY13 56 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 WDR73Q6P4I2 378 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 PLPPR2Q96GM1 343 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 TMEM140Q9NV12 185 aa17.46■□□□□ 0.39
UPF3A-202ENST00000375299 TBL2Q9Y4P3 447 aaKnown RBP17.46■□□□□ 0.39
UPF3A-202ENST00000375299 SAA2-SAA4A0A096LPE2 208 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 SMIM21Q3B7S5 101 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 OR10J3Q5JRS4 329 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 NAT8BQ9UHF3 227 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 CELSR3Q9NYQ7 3312 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 CGAP01215 116 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 OR10J4P0C629 311 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 IGHV1-2P23083 117 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 CTRLP40313 264 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 EDDM3AQ14507 147 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 CENPWQ5EE01 88 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 GNG12Q9UBI6 72 aa17.45■□□□□ 0.38
UPF3A-202ENST00000375299 COL8A2P25067 703 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 GNG4P50150 75 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 CX3CL1P78423 397 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 MORN2Q502X0 79 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 C1orf174Q8IYL3 243 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 KCNS1Q96KK3 526 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 GUCD1Q96NT3 240 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 NRN1Q9NPD7 142 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 JPT1Q9UK76 154 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 ARL2-SNX15V9GYD0 113 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 A0A1W2PNU3 283 aaPredicted RBP17.44■□□□□ 0.38
UPF3A-202ENST00000375299 RAB31Q13636 194 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 RPL39P5Q59GN2 51 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 GCNT2Q8N0V5 402 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 KLF13Q9Y2Y9 288 aaPredicted RBP17.44■□□□□ 0.38
UPF3A-202ENST00000375299 CBY1Q9Y3M2 126 aa17.44■□□□□ 0.38
UPF3A-202ENST00000375299 AMTP48728 403 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 COX19Q49B96 90 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 SPATA45Q537H7 98 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 TMEM136Q6ZRR5 245 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 FAM90A1Q86YD7 464 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 CD177Q8N6Q3 437 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 S1PR3Q99500 378 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 DEFB127Q9H1M4 99 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 COLQQ9Y215 455 aaPredicted RBP17.43■□□□□ 0.38
UPF3A-202ENST00000375299 ZDBF2Q9HCK1 2354 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 HELTA6NFD8 242 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 LYZL6O75951 148 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 ZNF883P0CG24 379 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 NPY1RP25929 384 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 TFPI2P48307 235 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 RAB7AP51149 207 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 SUMO1P63165 101 aaKnown RBP17.43■□□□□ 0.38
UPF3A-202ENST00000375299 PRR20EP86478 221 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 PRR20CP86479 221 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 PRR20DP86480 221 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 PRR20BP86481 221 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 PRR20AP86496 221 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 MIR17HGQ75NE6 70 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 SLC24A4Q8NFF2 622 aa17.43■□□□□ 0.38
UPF3A-202ENST00000375299 SLC25A10Q9UBX3 287 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms