RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SRP19P09132 144 aaKnown RBP9.7□□□□□ -0.86
PTPRF-203ENST00000372407 IGFBP3P17936 291 aaPredicted RBP9.7□□□□□ -0.86
PTPRF-203ENST00000372407 CENPWQ5EE01 88 aa9.7□□□□□ -0.86
PTPRF-203ENST00000372407 TMEM183AQ8IXX5 376 aa9.7□□□□□ -0.86
PTPRF-203ENST00000372407 EAF1Q96JC9 268 aaPredicted RBP9.7□□□□□ -0.86
PTPRF-203ENST00000372407 SGK494Q96LW2 274 aa9.7□□□□□ -0.86
PTPRF-203ENST00000372407 MIEN1Q9BRT3 115 aa9.7□□□□□ -0.86
PTPRF-203ENST00000372407 REPIN1Q9BWE0 567 aaKnown RBP9.7□□□□□ -0.86
PTPRF-203ENST00000372407 ZNF646O15015 1829 aaPredicted RBP9.7□□□□□ -0.86
PTPRF-203ENST00000372407 COL6A6A6NMZ7 2263 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 GDF9O60383 454 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 COX6CP09669 75 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 GPX4P36969 197 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-203ENST00000372407 RNF115Q9Y4L5 304 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 FREM3P0C091 2139 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 WNT9BO14905 357 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 ZNF324O75467 553 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-203ENST00000372407 IGLV3-19P01714 112 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 CBLN1P23435 193 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 UQCRFS1P47985 274 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 NEU1Q99519 415 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 CLEC7AQ9BXN2 247 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 NPCDR1Q9BY65 106 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 IGHV3-48P01763 117 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 GFRA1P56159 465 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 ERASQ7Z444 233 aa9.69□□□□□ -0.86
PTPRF-203ENST00000372407 OSR1Q8TAX0 266 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-203ENST00000372407 TRAV14DV4A0A0A6YYC5 116 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 ANOS1P23352 680 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 GCSHP23434 173 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 GOLT1AQ6ZVE7 132 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 SSBP3Q9BWW4 388 aaPredicted RBP9.68□□□□□ -0.86
PTPRF-203ENST00000372407 CBLN4Q9NTU7 201 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 PHLDA3Q9Y5J5 127 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 LOC107984156A0A0G2JMH3 177 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 H3BTX0 84 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 BTCP35070 178 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 TFPI2P48307 235 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 PSG9Q00887 426 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 ARL17AQ8IVW1 177 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 WFIKKN1Q96NZ8 548 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 ZNF703Q9H7S9 590 aaPredicted RBP9.68□□□□□ -0.86
PTPRF-203ENST00000372407 AKIRIN1Q9H9L7 192 aaPredicted RBP9.68□□□□□ -0.86
PTPRF-203ENST00000372407 ABCA4P78363 2273 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 C19orf67A6NJJ6 358 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 LIPFP07098 398 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 IL6RP08887 468 aaPredicted RBP9.68□□□□□ -0.86
PTPRF-203ENST00000372407 CEACAM1P13688 526 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 C21orf62-AS1Q17RA5 79 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 TIMM23BQ5SRD1 257 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 PCSK4Q6UW60 755 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 C1QTNF5Q9BXJ0 243 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 CGB1A6NKQ9 187 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 PROB1E7EW31 1015 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 REG1AP05451 166 aa9.68□□□□□ -0.86
PTPRF-203ENST00000372407 MRPL13Q9BYD1 178 aaKnown RBP9.68□□□□□ -0.86
PTPRF-203ENST00000372407 TRBV23-1A0A0A0MS06 115 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 NBEAP1P0C6P0 100 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 PLP1P60201 277 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 CX3CL1P78423 397 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 ATP1A1-AS1Q5TC04 95 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 MBNL2Q5VZF2 373 aaKnown RBP9.67□□□□□ -0.86
PTPRF-203ENST00000372407 ATRAIDQ6UW56 229 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 ACP7Q6ZNF0 438 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 RAB37Q96AX2 223 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 OTX1P32242 354 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-203ENST00000372407 RPL39P5Q59GN2 51 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 SAPCD1Q5SSQ6 148 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 SYT8Q8NBV8 401 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 RALYQ9UKM9 306 aaKnown RBP9.67□□□□□ -0.86
PTPRF-203ENST00000372407 NEUROG3Q9Y4Z2 214 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 NPIPB11E5RHQ5 1161 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 REC114Q7Z4M0 266 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 IMMP1LQ96LU5 166 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 ZNF256Q9Y2P7 627 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-203ENST00000372407 NUDT3O95989 172 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 IL4P05112 153 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 CECR9P0C854 216 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 HBBP68871 147 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 DDB2Q92466 427 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 SIGLEC12Q96PQ1 595 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 RTN4RQ9BZR6 473 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 IFI27L2Q9H2X8 130 aa9.67□□□□□ -0.86
PTPRF-203ENST00000372407 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.66□□□□□ -0.863e-7■■■□□ 16.4
PTPRF-203ENST00000372407 IGHV1-69-2A0A0G2JMI3 117 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 DPRXA6NFQ7 191 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 C17orf98A8MV24 154 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 NPIPB7O75200 414 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 PRSS2P07478 247 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 TUBA4BQ9H853 241 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 ZNF837Q96EG3 531 aaPredicted RBP9.66□□□□□ -0.86
PTPRF-203ENST00000372407 A0A087WWC5 75 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 CELA3AP09093 270 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 NPPCP23582 126 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 FOXA3P55318 350 aaPredicted RBP9.66□□□□□ -0.86
PTPRF-203ENST00000372407 FAM106AQ4KMX7 169 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 FADS6Q8N9I5 356 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.66□□□□□ -0.86
PTPRF-203ENST00000372407 FDCSPQ8NFU4 85 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 RNF126Q9BV68 326 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms