RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MRPL37Q9BZE1 423 aaKnown RBP10.04□□□□□ -0.8
CLIP3-201ENST00000360535 DMXL1Q9Y485 3027 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 IGKV1D-17A0A075B6S4 117 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 CGAP01215 116 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 IER3P46695 156 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 TNFSF10P50591 281 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 KIAA1644Q3SXP7 199 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 TOMM20LQ6UXN7 152 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 RYDENQ9NUL5 291 aaKnown RBP10.04□□□□□ -0.8
CLIP3-201ENST00000360535 TP53TG5Q9Y2B4 290 aa10.04□□□□□ -0.8
CLIP3-201ENST00000360535 PTPRZ1P23471 2315 aaPredicted RBP10.04□□□□□ -0.8
CLIP3-201ENST00000360535 C15orf65H3BRN8 121 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 VENTXO95231 258 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 OR10J4P0C629 311 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 IGFBP2P18065 325 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 SPCS3P61009 180 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 RBM14Q96PK6 669 aaKnown RBP10.03□□□□□ -0.8
CLIP3-201ENST00000360535 OR2V2Q96R30 315 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 TBX15Q96SF7 602 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 CDX4O14627 284 aaPredicted RBP10.03□□□□□ -0.8
CLIP3-201ENST00000360535 GCGP01275 180 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 IGHV3-48P01763 117 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 IL6RP08887 468 aaPredicted RBP10.03□□□□□ -0.8
CLIP3-201ENST00000360535 TIMP3P35625 211 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 ERVFC1-1P60608 527 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 RPP30P78346 268 aaKnown RBP10.03□□□□□ -0.8
CLIP3-201ENST00000360535 FXYD3Q14802 87 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 MLANAQ16655 118 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 IQCJQ1A5X6 159 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 BAGE3Q86Y29 109 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 BAGE2Q86Y30 109 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 GBGT1Q8N5D6 347 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 KCNIP2Q9NS61 270 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 ACACAQ13085 2346 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 IGHV2OR16-5A0A0B4J2B6 119 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 GFRA3O60609 400 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 ADH4P08319 380 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 MSMPQ1L6U9 139 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 PRR31Q5SQ13 230 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 STPG3Q8N7X2 389 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 RND1Q92730 232 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 ELOVL5Q9NYP7 299 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 ZNF318Q5VUA4 2279 aa10.03□□□□□ -0.8
CLIP3-201ENST00000360535 ADGRG4Q8IZF6 3080 aa10.02□□□□□ -0.8
CLIP3-201ENST00000360535 F2Z2F3 143 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 PSG5Q15238 335 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 DOLPP1Q86YN1 238 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 CMTM2Q8TAZ6 248 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 NDUFAF3Q9BU61 184 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 SAMD10Q9BYL1 202 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 SERTAD4Q9NUC0 356 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 TMEM265A0A087WTH1 108 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 IGHV1-18A0A0C4DH31 117 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 FCN1O00602 326 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 OR7C2O60412 319 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 CXorf1O96002 111 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 GCHFRP30047 84 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 TDRG1Q3Y452 100 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 ARSJQ5FYB0 599 aaPredicted RBP10.02□□□□□ -0.81
CLIP3-201ENST00000360535 MIR17HGQ75NE6 70 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 NAV3Q8IVL0 2385 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 NHLRC2Q8NBF2 726 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 RNASEH2CQ8TDP1 164 aaKnown RBP10.02□□□□□ -0.81
CLIP3-201ENST00000360535 SNRNP40Q96DI7 357 aaKnown RBP10.02□□□□□ -0.81
CLIP3-201ENST00000360535 PAM16Q9Y3D7 125 aa10.02□□□□□ -0.81
CLIP3-201ENST00000360535 CA2P00918 260 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 MGST1P10620 155 aaKnown RBP10.01□□□□□ -0.81
CLIP3-201ENST00000360535 NPY1RP25929 384 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 RELBQ01201 579 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 EFNB3Q15768 340 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 NPVFQ9HCQ7 196 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 CLCF1Q9UBD9 225 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 AHRRA9YTQ3 701 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 IGKV3-15P01624 115 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 CRYBB3P26998 211 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 RPL15P61313 204 aaKnown RBP10.01□□□□□ -0.81
CLIP3-201ENST00000360535 VWC2Q2TAL6 325 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 OR8I2Q8N0Y5 310 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 GCSAMQ8N6F7 178 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 ITLN1Q8WWA0 313 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 CALYQ9NYX4 217 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 NAGKQ9UJ70 344 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 STAG3L2P0CL84 134 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 STAG3L3P0CL85 134 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 ZNF25P17030 456 aaPredicted RBP10.01□□□□□ -0.81
CLIP3-201ENST00000360535 OPRK1P41145 380 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 TEPPQ6URK8 271 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 SLC24A4Q8NFF2 622 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 OR1L6Q8NGR2 347 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 NOL4LQ96MY1 436 aaPredicted RBP10.01□□□□□ -0.81
CLIP3-201ENST00000360535 MRPL18Q9H0U6 180 aaKnown RBP10.01□□□□□ -0.81
CLIP3-201ENST00000360535 DCAF16Q9NXF7 216 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 ZGRF1Q86YA3 2104 aa10.01□□□□□ -0.81
CLIP3-201ENST00000360535 PTPRBP23467 1997 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 SNURFLB1AK76 121 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 K7EN84 100 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 CRISP2P16562 243 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 HTD2P86397 168 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 OR4A47Q6IF82 309 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 VN1R17PQ8TDU5 208 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms