RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CT83Q5H943 113 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 FAM201AQ5SY85 155 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 KPRPQ5T749 579 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-201ENST00000355766 ZNF841Q6ZN19 808 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 OR4F5Q8NH21 305 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 OR51H1Q8NH63 302 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 OR4S2Q8NH73 311 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 LHFPL5Q8TAF8 219 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 RRNAD1Q96FB5 475 aaKnown RBP5.6□□□□□ -1.51
VPS13A-201ENST00000355766 OR10C1Q96KK4 312 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 RAB40CQ96S21 281 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 S1PR3Q99500 378 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 PCGF1Q9BSM1 259 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 HEXA-AS1Q9H8Q6 139 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 PATZ1Q9HBE1 687 aaKnown RBP5.6□□□□□ -1.51
VPS13A-201ENST00000355766 SDHAF2Q9NX18 166 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 DCAF16Q9NXF7 216 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 MBD2Q9UBB5 411 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 CTSZQ9UBR2 303 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 PSG11Q9UQ72 335 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 WSB1Q9Y6I7 421 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 SESN1Q9Y6P5 492 aa5.6□□□□□ -1.51
VPS13A-201ENST00000355766 TRAV39A0A0B4J263 110 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 A0A1B0GW55 424 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 G3V4G9 280 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 K7EPK0 472 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 CCSO14618 274 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 TOR1AO14656 332 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 GPR137BO60478 399 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 MED6O75586 246 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 NDUFA7O95182 113 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DUX4L2P0CJ85 424 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DUX4L3P0CJ86 424 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DUX4L4P0CJ87 422 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DUX4L5P0CJ88 424 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DUX4L6P0CJ89 424 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DUX4L7P0CJ90 424 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 SELLP14151 372 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 CXCL2P19875 107 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 RAB13P51153 203 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 AKR1C2P52895 323 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 KRTAP10-3P60369 221 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 LCN2P80188 198 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 RAB32Q13637 225 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 OPCMLQ14982 345 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 RTL8BQ17RB0 113 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 SP6Q3SY56 376 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 ZNF585BQ52M93 769 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 Q5BKY6 102 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 WDR25Q64LD2 544 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-201ENST00000355766 EIF5AL1Q6IS14 154 aaKnown RBP5.59□□□□□ -1.51
VPS13A-201ENST00000355766 TEX261Q6UWH6 196 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 ZNF833PQ6ZTB9 187 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 C9orf139Q6ZV77 190 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 LYZL2Q7Z4W2 148 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 FOXRED2Q8IWF2 684 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 STPG2Q8N412 459 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 TPRX1Q8N7U7 411 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 LY6G5BQ8NDX9 201 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 OR9G1Q8NH87 305 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 LRRC20Q8TCA0 184 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DDB2Q92466 427 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 CIB3Q96Q77 187 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-201ENST00000355766 ARPC5LQ9BPX5 153 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 ARL6Q9H0F7 186 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 PARP12Q9H0J9 701 aaKnown RBP5.59□□□□□ -1.51
VPS13A-201ENST00000355766 C19orf12Q9NSK7 152 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 LYRM2Q9NU23 88 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-201ENST00000355766 DUX4Q9UBX2 424 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 AMMECR1Q9Y4X0 333 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-201ENST00000355766 AUP1Q9Y679 476 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 U3KQ87 197 aa5.59□□□□□ -1.51
VPS13A-201ENST00000355766 TENM3Q9P273 2699 aa5.59□□□□□ -1.52
VPS13A-201ENST00000355766 SAA2-SAA4A0A096LPE2 208 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 CLPSL1A2RUU4 121 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 TNFSF12O43508 249 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 ENSAO43768 121 aaKnown RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 TSC22D2O75157 780 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 MBPP02686 304 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 PRB2P02812 416 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 SAA2P0DJI9 122 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 IGHV1-8P0DP01 117 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 NQO2P16083 231 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 ATP5IP56385 69 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 ERVK-16P61578 105 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 BLOC1S1P78537 153 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 HOXA4Q00056 320 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 IFITM2Q01629 132 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 ZNF273Q14593 569 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 CT45A1Q5HYN5 189 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 DUX4L9Q6RFH8 374 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 TMUB2Q71RG4 321 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 ZNF429Q86V71 674 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 SPAG16Q8N0X2 631 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 PUSL1Q8N0Z8 303 aaKnown RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 OR52E5Q8NH55 327 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 CT45A3Q8NHU0 189 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 RNASE11Q8TAA1 199 aaKnown RBP5.58□□□□□ -1.52
VPS13A-201ENST00000355766 RFESDQ8TAC1 157 aa5.58□□□□□ -1.52
VPS13A-201ENST00000355766 OSR1Q8TAX0 266 aaPredicted RBP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms