RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ANKRD55Q3KP44 614 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 CADM3Q8N126 398 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 C9orf170A2RU37 121 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 DBX1A6NMT0 343 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 H2AFB2P0C5Z0 115 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 VDAC1P21796 283 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 CRIP2P52943 208 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-203ENST00000354098 RAB25P57735 213 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 OR2B8PP59922 312 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 CFHR3Q02985 330 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 C19orf54Q5BKX5 351 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 SLC35G3Q8N808 338 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 ZNF747Q9BV97 191 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 ZNF580Q9UK33 172 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 A0A1B0GW64 132 aa17.38■□□□□ 0.37
SHMT1-203ENST00000354098 HLA-AP01891 365 aaKnown RBP17.38■□□□□ 0.37
SHMT1-203ENST00000354098 PPIFP30405 207 aaKnown RBP17.38■□□□□ 0.37
SHMT1-203ENST00000354098 MAS1LP35410 378 aa17.38■□□□□ 0.37
SHMT1-203ENST00000354098 DHRS2Q13268 280 aa17.38■□□□□ 0.37
SHMT1-203ENST00000354098 C4orf46Q504U0 113 aa17.38■□□□□ 0.37
SHMT1-203ENST00000354098 ASPHD1Q5U4P2 390 aa17.38■□□□□ 0.37
SHMT1-203ENST00000354098 UNQ5815/PRO19632Q6UWF5 114 aa17.38■□□□□ 0.37
SHMT1-203ENST00000354098 DUSP18Q8NEJ0 188 aa17.38■□□□□ 0.37
SHMT1-203ENST00000354098 CGB1A6NKQ9 187 aa17.37■□□□□ 0.37
SHMT1-203ENST00000354098 SNAPC5O75971 98 aa17.37■□□□□ 0.37
SHMT1-203ENST00000354098 ATG12O94817 140 aa17.37■□□□□ 0.37
SHMT1-203ENST00000354098 CD28P10747 220 aa17.37■□□□□ 0.37
SHMT1-203ENST00000354098 TCTEX1D4Q5JR98 221 aa17.37■□□□□ 0.37
SHMT1-203ENST00000354098 LYZL2Q7Z4W2 148 aa17.37■□□□□ 0.37
SHMT1-203ENST00000354098 OR52B4Q8NGK2 314 aa17.37■□□□□ 0.37
SHMT1-203ENST00000354098 RRNAD1Q96FB5 475 aaKnown RBP17.37■□□□□ 0.37
SHMT1-203ENST00000354098 ALX4Q9H161 411 aaPredicted RBP17.37■□□□□ 0.37
SHMT1-203ENST00000354098 RPL27AP46776 148 aaKnown RBP17.36■□□□□ 0.37
SHMT1-203ENST00000354098 AKIRIN2Q53H80 203 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 Q6ZRM9 215 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 LYG2Q86SG7 212 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 LGI3Q8N145 548 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 MINDY2Q8NBR6 621 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 RNASE11Q8TAA1 199 aaKnown RBP17.36■□□□□ 0.37
SHMT1-203ENST00000354098 IL22RA2Q969J5 263 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 FYTTD1Q96QD9 318 aaKnown RBP17.36■□□□□ 0.37
SHMT1-203ENST00000354098 PHB2Q99623 299 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 GON7Q9BXV9 100 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 A0A0B4J293 547 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 TEX50A0A1B0GTY4 177 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 HMX3A6NHT5 357 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 SOX15O60248 233 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 SLC35B1P78383 322 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 TMEM267Q0VDI3 215 aaPredicted RBP17.36■□□□□ 0.37
SHMT1-203ENST00000354098 OR4A16Q8NH70 328 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 GPR146Q96CH1 333 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 CITED1Q99966 193 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 COMMD5Q9GZQ3 224 aa17.36■□□□□ 0.37
SHMT1-203ENST00000354098 A0A1W2PN81 502 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 C15orf61A6NNL5 157 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 TEX22C9J3V5 150 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 SPNP16150 400 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 CHRNA7P36544 502 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 MECP2P51608 486 aaKnown RBP17.35■□□□□ 0.37
SHMT1-203ENST00000354098 SRPXP78539 464 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 LCNL1Q6ZST4 164 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 OR5T1Q8NG75 326 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 TMEM14BQ9NUH8 114 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 PRNDQ9UKY0 176 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 OR51B2Q9Y5P1 312 aa17.35■□□□□ 0.37
SHMT1-203ENST00000354098 IGHG4P01861 327 aa17.34■□□□□ 0.37
SHMT1-203ENST00000354098 FGF2P09038 288 aa17.34■□□□□ 0.37
SHMT1-203ENST00000354098 LRTM2Q8N967 370 aa17.34■□□□□ 0.37
SHMT1-203ENST00000354098 SPIN2AQ99865 258 aa17.34■□□□□ 0.37
SHMT1-203ENST00000354098 SPIN2BQ9BPZ2 258 aa17.34■□□□□ 0.37
SHMT1-203ENST00000354098 SEC22CQ9BRL7 303 aa17.34■□□□□ 0.37
SHMT1-203ENST00000354098 QTRT1Q9BXR0 403 aaKnown RBP17.34■□□□□ 0.37
SHMT1-203ENST00000354098 PALMDQ9NP74 551 aa17.34■□□□□ 0.37
SHMT1-203ENST00000354098 A0A0B4J2A0 478 aa17.33■□□□□ 0.37
SHMT1-203ENST00000354098 FBXO24O75426 580 aa17.33■□□□□ 0.37
SHMT1-203ENST00000354098 RBMXL2O75526 392 aaKnown RBP17.33■□□□□ 0.37
SHMT1-203ENST00000354098 TEX38Q6PEX7 206 aa17.33■□□□□ 0.37
SHMT1-203ENST00000354098 LSM10Q969L4 123 aaKnown RBP17.33■□□□□ 0.37
SHMT1-203ENST00000354098 SHPKQ9UHJ6 478 aa17.33■□□□□ 0.37
SHMT1-203ENST00000354098 FOXA2Q9Y261 457 aaPredicted RBP17.33■□□□□ 0.37
SHMT1-203ENST00000354098 DUS4LO95620 317 aaKnown RBP17.32■□□□□ 0.36
SHMT1-203ENST00000354098 IGLV1-40P01703 118 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 DCTN2Q13561 401 aaKnown RBP17.32■□□□□ 0.36
SHMT1-203ENST00000354098 PLET1Q6UQ28 207 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 FAM219AQ8IW50 185 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 OR10W1Q8NGF6 305 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 OR4X2Q8NGF9 303 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 SPATA3Q8NHX4 192 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 CITED2Q99967 270 aaPredicted RBP17.32■□□□□ 0.36
SHMT1-203ENST00000354098 AREGP15514 252 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 CD83Q01151 205 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 NMSQ5H8A3 153 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 OR1L8Q8NGR8 309 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 HINT2Q9BX68 163 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 KLK15Q9H2R5 256 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 NDUFA4L2Q9NRX3 87 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 FKBP11Q9NYL4 201 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 CACNG5Q9UF02 275 aa17.32■□□□□ 0.36
SHMT1-203ENST00000354098 PSMB8P28062 276 aa17.31■□□□□ 0.36
SHMT1-203ENST00000354098 SHISA2Q6UWI4 295 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms