RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 GCHFRP30047 84 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 ST6GALNAC3Q8NDV1 305 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 OR4A16Q8NH70 328 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 C21orf140B9A014 251 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 WISP2O76076 250 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 LGALS4P56470 323 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 RANP62826 216 aaKnown RBP18.53■□□□□ 0.56
TRIM28-202ENST00000341753 PLA2G2CQ5R387 149 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 DMRTA1Q5VZB9 504 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 SLC35E4Q6ICL7 350 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 MMD2Q8IY49 270 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 GNB4Q9HAV0 340 aa18.53■□□□□ 0.56
TRIM28-202ENST00000341753 ACTL6BO94805 426 aa18.52■□□□□ 0.56
TRIM28-202ENST00000341753 TCL1AP56279 114 aa18.52■□□□□ 0.56
TRIM28-202ENST00000341753 C1orf159Q96HA4 380 aa18.52■□□□□ 0.56
TRIM28-202ENST00000341753 KMT2EQ8IZD2 1858 aa18.52■□□□□ 0.56
TRIM28-202ENST00000341753 HCFC1P51610 2035 aa18.52■□□□□ 0.56
TRIM28-202ENST00000341753 CNOT1A5YKK6 2376 aaKnown RBP18.52■□□□□ 0.55
TRIM28-202ENST00000341753 FBXW9Q5XUX1 488 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 SIGLECL1Q8N7X8 197 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 NANOS1Q8WY41 292 aaKnown RBP18.51■□□□□ 0.55
TRIM28-202ENST00000341753 HSD17B10Q99714 261 aaKnown RBP18.51■□□□□ 0.55
TRIM28-202ENST00000341753 IL6RP08887 468 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-202ENST00000341753 SFTPCP11686 197 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 PMCHP20382 165 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 GPR12P47775 334 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 FXYD3Q14802 87 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 TMEM249Q2WGJ8 235 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 RPL39P5Q59GN2 51 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 ASPHD1Q5U4P2 390 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 OR4P4Q8NGL7 312 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 LYZL6O75951 148 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 CGAP01215 116 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 MMDQ15546 238 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 EFNB3Q15768 340 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 RPEL1Q2QD12 228 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 DOLPP1Q86YN1 238 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 C11orf53Q8IXP5 236 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 SPRR3Q9UBC9 169 aa18.51■□□□□ 0.55
TRIM28-202ENST00000341753 EAF1Q96JC9 268 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-202ENST00000341753 RCHY1Q96PM5 261 aa18.5■□□□□ 0.55
TRIM28-202ENST00000341753 RNASE7Q9H1E1 156 aaKnown RBP18.5■□□□□ 0.55
TRIM28-202ENST00000341753 NAT8BQ9UHF3 227 aa18.5■□□□□ 0.55
TRIM28-202ENST00000341753 TBL2Q9Y4P3 447 aaKnown RBP18.5■□□□□ 0.55
TRIM28-202ENST00000341753 M0R1X1 148 aa18.5■□□□□ 0.55
TRIM28-202ENST00000341753 GFRA3O60609 400 aa18.5■□□□□ 0.55
TRIM28-202ENST00000341753 DUTP33316 252 aaKnown RBP18.5■□□□□ 0.55
TRIM28-202ENST00000341753 HTD2P86397 168 aa18.5■□□□□ 0.55
TRIM28-202ENST00000341753 HES4Q9HCC6 221 aa18.5■□□□□ 0.55
TRIM28-202ENST00000341753 DIRC3C9JPN6 131 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 ESDP10768 282 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 STPG3Q8N7X2 389 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 FAM122AQ96E09 287 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 TET2Q6N021 2002 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-202ENST00000341753 PRSS46E5RG02 174 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 MPDU1O75352 247 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 VDAC2P45880 294 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-202ENST00000341753 MRPS11P82912 194 aaKnown RBP18.49■□□□□ 0.55
TRIM28-202ENST00000341753 ACP7Q6ZNF0 438 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 MDS2Q8NDY4 140 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 V9GYV3 84 aa18.49■□□□□ 0.55
TRIM28-202ENST00000341753 SVILO95425 2214 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 A8MXE2 369 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 RELQ04864 619 aaPredicted RBP18.48■□□□□ 0.55
TRIM28-202ENST00000341753 GCNT2Q8N0V5 402 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 Q8N976 141 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 KLF14Q8TD94 323 aaPredicted RBP18.48■□□□□ 0.55
TRIM28-202ENST00000341753 UHRF2Q96PU4 802 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 GNG12Q9UBI6 72 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 GPX1P07203 203 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 AMTP48728 403 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 GAGE1Q13065 139 aa18.48■□□□□ 0.55
TRIM28-202ENST00000341753 AHRRA9YTQ3 701 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 MYOD1P15172 320 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 ARG2P78540 354 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 MIR17HGQ75NE6 70 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 TRAV34A0A0B4J273 112 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 CRYBB3P26998 211 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 MRPL49Q13405 166 aaKnown RBP18.47■□□□□ 0.55
TRIM28-202ENST00000341753 SPATA45Q537H7 98 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 CENPWQ5EE01 88 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 UTF1Q5T230 341 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 C11orf42Q8N5U0 333 aa18.47■□□□□ 0.55
TRIM28-202ENST00000341753 TCF21O43680 179 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 AGFG2O95081 481 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 RAB7AP51149 207 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 PQLC2Q6ZP29 291 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 TXNDC17Q9BRA2 123 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 NRN1Q9NPD7 142 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 ZNF586Q9NXT0 402 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 IQCF6A8MYZ5 107 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 RPP30P78346 268 aaKnown RBP18.46■□□□□ 0.55
TRIM28-202ENST00000341753 MRPL54Q6P161 138 aaKnown RBP18.46■□□□□ 0.55
TRIM28-202ENST00000341753 ATOH7Q8N100 152 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 LEAP2Q969E1 77 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 HINT2Q9BX68 163 aa18.46■□□□□ 0.55
TRIM28-202ENST00000341753 KLF13Q9Y2Y9 288 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-202ENST00000341753 KLRC4-KLRK1H3BQV0 150 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 SIAH2O43255 324 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 Q0VG73 95 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms