RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 M6PRP20645 277 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 NUTF2P61970 127 aaKnown RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 C19orf24Q9BVV8 132 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 IGLV3-9A0A075B6K5 115 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 CTXND1A0A1B0GTU2 59 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 J3KRW8 73 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 SRSF10O75494 262 aaKnown RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 GRNP28799 593 aaKnown RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 RPL30P62888 115 aaKnown RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 FAM162BQ5T6X4 162 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 CLEC19AQ6UXS0 136 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 SLC25A48Q6ZT89 311 aaKnown RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 KIR3DL3Q8N743 410 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 TP53RKQ96S44 253 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 AHCTF1Q8WYP5 2266 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 IGHV3-23P01764 117 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 WNT10AQ9GZT5 417 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 IGHV1-69DA0A0B4J2H0 117 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 IGSF23A1L1A6 192 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 FAM90A9PA6NNJ1 464 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 IGHV1-69P01742 117 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 ZNF735P0CB33 412 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 RPS10P46783 165 aaKnown RBP8.4□□□□□ -1.06
USP54-201ENST00000339859 FGF8P55075 233 aaPredicted RBP8.4□□□□□ -1.06
USP54-201ENST00000339859 GPHA2Q96T91 129 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 MSGN1A6NI15 193 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 ZNF324BQ6AW86 544 aaPredicted RBP8.4□□□□□ -1.06
USP54-201ENST00000339859 Q6P435 159 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 MRPL32Q9BYC8 188 aaKnown RBP8.4□□□□□ -1.06
USP54-201ENST00000339859 ZNF257Q9Y2Q1 563 aa8.4□□□□□ -1.06
USP54-201ENST00000339859 ELOA3CA0A087WX78 387 aaPredicted RBP8.4□□□□□ -1.07
USP54-201ENST00000339859 TCF21O43680 179 aa8.4□□□□□ -1.07
USP54-201ENST00000339859 GATCO43716 136 aaKnown RBP8.4□□□□□ -1.07
USP54-201ENST00000339859 PDE6DO43924 150 aa8.4□□□□□ -1.07
USP54-201ENST00000339859 SELLP14151 372 aa8.4□□□□□ -1.07
USP54-201ENST00000339859 SERF2P84101 59 aa8.4□□□□□ -1.07
USP54-201ENST00000339859 IFI27L2Q9H2X8 130 aa8.4□□□□□ -1.07
USP54-201ENST00000339859 OR9G9P0C7N8 305 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 ZP3P21754 424 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 PCNPQ8WW12 178 aaKnown RBP8.39□□□□□ -1.07
USP54-201ENST00000339859 HKR1P10072 659 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 TEX36Q5VZQ5 186 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 OR51G1Q8NGK1 321 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 DDB2Q92466 427 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 TMEM204Q9BSN7 226 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 BOLA1Q9Y3E2 137 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 GPR183P32249 361 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 GUK1Q16774 197 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 LGALSLQ3ZCW2 172 aaPredicted RBP8.39□□□□□ -1.07
USP54-201ENST00000339859 GTSCR1Q86UQ5 136 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 SYT8Q8NBV8 401 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 GGACTQ9BVM4 153 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 IFT22Q9H7X7 185 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 DNAJC4Q9NNZ3 241 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 TRBV6-6A0A0A6YYG2 114 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 CMC4P56277 68 aaPredicted RBP8.39□□□□□ -1.07
USP54-201ENST00000339859 ZNF345Q14585 488 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 FBXL19-AS1Q494R0 122 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 BAGE3Q86Y29 109 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 BAGE2Q86Y30 109 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 MAPK1IP1LQ8NDC0 245 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 SRSF12Q8WXF0 261 aaKnown RBP8.39□□□□□ -1.07
USP54-201ENST00000339859 CD33P20138 364 aa8.39□□□□□ -1.07
USP54-201ENST00000339859 USF2Q15853 346 aaPredicted RBP8.39□□□□□ -1.07
USP54-201ENST00000339859 C20orf202A1L168 122 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 C10orf142B7Z368 130 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 C11orf94C9JXX5 98 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 ORM1P02763 201 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 IL4P05112 153 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 SAA4P35542 130 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 ZNF660Q6AZW8 331 aaPredicted RBP8.38□□□□□ -1.07
USP54-201ENST00000339859 CYP2G1PQ6ZSU1 146 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 TMEM252Q8N6L7 170 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 CD24P25063 80 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 UCP1P25874 307 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 CFHR2P36980 270 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 UQCC3Q6UW78 93 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 BEND2Q8NDZ0 799 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 BET1LQ9NYM9 111 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 GAB2Q9UQC2 676 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 C15orf61A6NNL5 157 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 COL8A1P27658 744 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 NPIPB3Q92617 1050 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 GPR82Q96P67 336 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 TNFSF18Q9UNG2 199 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 A0A0A6YYD4 124 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 SHISA3A0PJX4 238 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 C5orf63A6NC05 138 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 PSPNO60542 156 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 IGHV3-11P01762 117 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 ZNF429Q86V71 674 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 TMEM219Q86XT9 240 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 ZNF503-AS2A6NEH8 195 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 PPP5D1E7EU14 171 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 SOD3P08294 240 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 DUTP33316 252 aaKnown RBP8.38□□□□□ -1.07
USP54-201ENST00000339859 SOSTQ9BQB4 213 aa8.38□□□□□ -1.07
USP54-201ENST00000339859 OR2C1O95371 312 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 TMEM241Q24JQ0 296 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 GBGT1Q8N5D6 347 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms